Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06072 ATGGATCGGGTGCTGAAAGCGGCGAGAGCATCTGGTTCTTTAAACCTCTCCAATCGCTCCCTCAGAGAAGTTCCCGATGAGGTTTACCGGAATCTGGAAGGGCTCGGTGGTGACGATAAGTGGTGGGAGGCTGCGGAGCTTCAGAAGCTCATTTTGGCTCACAATTGTATTGAATCGTTAAAGGAAGATATCAGAAATTTACCTTTTCTTGCTGTGTTGAATCTCAGCCACAACAGTCTTTCCCAGCTTCCCGCTGCCATAGGAGAGCTTCCTCAGTTGAAGATGCTGGATGTTTCGTTCAATTCGATACTTAGAATTCCGGAGGAAATTGGGTCAGCTGGGTCGCTTGTAAAGTTTGATTTCTCAAACAATCAGCTCAAGGAACTTCCAAGCTCCCTTGGTAGATGCTTAGAGTTGTCAGACTTAAAGGGATCAAACAATCTTATTGCAAGCTTGCCAGAAGACTTGGCAAATTGTTCCAAATTGTCTAAGCTAGATATGGAGGGAAACAAGCTAACAATGATATCTGAGAATCTCATTTCATCATGGATAATGCTTACTGAATTAAATTCATCAAAAAATTTGCTGAATGGCATACCAGTAAGCATTGGAGGCCTTTCACGTCTTATTCGTCTTGACCTCCATCAGAACAGAATCTCATCAATCCCTTCATCAATCATTGGTTGTCATTCACTTATGGAGTTTTATTTGGGGAATAATAATATTTCTACAATACCAGTGGAGATAGGGGCCCTTTCTCGACTTGGGACTTTAGATCTTCACTCTAACCAGATGAAGGAATATCCTGTACAGGCATGCAAATTGAGTCTTTCGGTGTTGGATCTTTCCAATAATTCATTGAGTGGATTACCGCCTGAAATGGGCAAGATGACTAGTTTGAGGAAACTTCTGCTTAGCGGAAATCCTTTGCGGACTCTTCGAAGTTCATTAGTCTCTGGACCTACACCAGCATTGCTGAAATTTCTCCGAAGTAGACTTTCTGAAGGTGAAGATTCTGAAGCTATAACCACAACCAAAGAGGACATGATTGCAATGGCTGCCCGATTGTCTATCACTTCGAAGGAACTTTCTATGGAAGGGCTGGGGTTGAGTGCTGTTCCATCAGAAGTATGGGAATCAGGGGAGGTCATAAAACTTGATCTTTCCAGAAACTCTATCCAGGAGTTGCCAGTTGAACTTTCTTCATGTGTTTCCCTCCAGACATTGATTTTATCTAAGAATCAAATTAAAGACTGGCCAGGTTCAATTCTTAAATCATTTAAGAGTCTTTCATGTTTGAAGCTGGACAACAATCCCCTCAGACAGATACCGTCAGATGGTTTTGAAGTGGTGCCTAAGCTCCAGATCCTGGATCTGAGTGGTAATGCAGCTGCATTACAAGATGGTCCTGCGTTTTCTTGTTTGCCATACCTGCAAGAGCTTTACCTGAGAAGAATGCGGCTCAATGAAGTATCATCAGATATATTGAGGTTGAATCAACTAAGGATCCTTGACTTGAGTCAGAATTCCCTTCAATCAATTCCACCGGTAACATTTTCTTTTCTTTTGGGTAGGAAACAAGGACTAGGCTTGCGTATATGCTTCATTTTGATTCACGTCCTGTGA 1626 0.4231 MDRVLKAARASGSLNLSNRSLREVPDEVYRNLEGLGGDDKWWEAAELQKLILAHNCIESLKEDIRNLPFLAVLNLSHNSLSQLPAAIGELPQLKMLDVSFNSILRIPEEIGSAGSLVKFDFSNNQLKELPSSLGRCLELSDLKGSNNLIASLPEDLANCSKLSKLDMEGNKLTMISENLISSWIMLTELNSSKNLLNGIPVSIGGLSRLIRLDLHQNRISSIPSSIIGCHSLMEFYLGNNNISTIPVEIGALSRLGTLDLHSNQMKEYPVQACKLSLSVLDLSNNSLSGLPPEMGKMTSLRKLLLSGNPLRTLRSSLVSGPTPALLKFLRSRLSEGEDSEAITTTKEDMIAMAARLSITSKELSMEGLGLSAVPSEVWESGEVIKLDLSRNSIQELPVELSSCVSLQTLILSKNQIKDWPGSILKSFKSLSCLKLDNNPLRQIPSDGFEVVPKLQILDLSGNAAALQDGPAFSCLPYLQELYLRRMRLNEVSSDILRLNQLRILDLSQNSLQSIPPVTFSFLLGRKQGLGLRICFILIHVL. 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06072 541 Pfam Leucine Rich Repeat 276 292 IPR001611 GO:0005515
Seca4g06072 541 Gene3D Ribonuclease Inhibitor 1 176 IPR032675 -
Seca4g06072 541 SUPERFAMILY L domain-like 41 317 - -
Seca4g06072 541 ProSiteProfiles Leucine-rich repeat profile. 405 426 IPR001611 GO:0005515
Seca4g06072 541 ProSiteProfiles Leucine-rich repeat profile. 208 229 IPR001611 GO:0005515
Seca4g06072 541 PANTHER - 367 516 - -
Seca4g06072 541 Gene3D Ribonuclease Inhibitor 270 335 IPR032675 -
Seca4g06072 541 Gene3D Ribonuclease Inhibitor 177 269 IPR032675 -
Seca4g06072 541 SMART LRR_bac_2 113 132 - -
Seca4g06072 541 SMART LRR_bac_2 206 225 - -
Seca4g06072 541 SMART LRR_bac_2 498 517 - -
Seca4g06072 541 SMART LRR_bac_2 159 178 - -
Seca4g06072 541 SMART LRR_bac_2 67 86 - -
Seca4g06072 541 SMART LRR_bac_2 90 109 - -
Seca4g06072 541 Pfam BspA type Leucine rich repeat region (6 copies) 116 194 IPR026906 -
Seca4g06072 541 ProSiteProfiles Leucine-rich repeat profile. 46 68 IPR001611 GO:0005515
Seca4g06072 541 SUPERFAMILY L domain-like 361 522 - -
Seca4g06072 541 ProSiteProfiles Leucine-rich repeat profile. 276 297 IPR001611 GO:0005515
Seca4g06072 541 Pfam Leucine rich repeat 405 462 IPR001611 GO:0005515
Seca4g06072 541 Pfam Leucine rich repeat 208 264 IPR001611 GO:0005515
Seca4g06072 541 Pfam Leucine rich repeat 46 103 IPR001611 GO:0005515
Seca4g06072 541 Pfam Leucine rich repeat 476 522 IPR001611 GO:0005515
Seca4g06072 541 SMART LRR_typ_2 381 403 IPR003591 -
Seca4g06072 541 SMART LRR_typ_2 159 182 IPR003591 -
Seca4g06072 541 SMART LRR_typ_2 230 251 IPR003591 -
Seca4g06072 541 SMART LRR_typ_2 427 450 IPR003591 -
Seca4g06072 541 SMART LRR_typ_2 90 113 IPR003591 -
Seca4g06072 541 SMART LRR_typ_2 276 296 IPR003591 -
Seca4g06072 541 SMART LRR_typ_2 297 320 IPR003591 -
Seca4g06072 541 SMART LRR_typ_2 45 66 IPR003591 -
Seca4g06072 541 SMART LRR_typ_2 498 521 IPR003591 -
Seca4g06072 541 SMART LRR_typ_2 252 275 IPR003591 -
Seca4g06072 541 SMART LRR_typ_2 404 426 IPR003591 -
Seca4g06072 541 SMART LRR_typ_2 67 88 IPR003591 -
Seca4g06072 541 SMART LRR_typ_2 114 136 IPR003591 -
Seca4g06072 541 SMART LRR_typ_2 206 229 IPR003591 -
Seca4g06072 541 PRINTS Leucine-rich repeat signature 277 290 - -
Seca4g06072 541 PRINTS Leucine-rich repeat signature 498 511 - -
Seca4g06072 541 ProSiteProfiles Leucine-rich repeat profile. 500 521 IPR001611 GO:0005515
Seca4g06072 541 Gene3D Ribonuclease Inhibitor 343 529 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06072 Seca-Chr4 118730440 118749079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g06072 86 525 Receptor kinase-like Gene Family AT3G28040 31.707 3.10e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06072 - - gmx:100781571 868.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g06072 4 118730440 118749079 Seca4g06072 4 118730440 118749079 ECH