Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06068 ATGGGAGACCGTTTTAGACCTTTTTCCATTGAGGAGTTGCCTTCACATTTGGTTTTAGAAATTCTGTGCTCGGGCAGGCTCAGTGCAACAGACCTTGTTTGTTTGGAGTTGACTTCCAAGACTTTTGGTGGTAGCCATGGCTTGTACCCTTTCAAGTTTAAGTCCTTGATAGACTTTGCTGCATTTCAATTGTGTGCCTCCCATGCTATCTATTCTAGGATAGGTTTGAATTCTCAGAGGGAGTTATATGATCGATGTGGGGGAAATTGGAAGCGAGTTTTGAGGTTCTTGCAGTCTGTGGAACAATCCTCTGAGATGGTCGAGACATCATCAGGCAATATGCAAATTACAACTGGAAAGTATCACACATTGGTGATCAGCAATTCCTCTGTCTACTCTTGTGGTTCTGGTTTGTGTGGCGTACTTGGTCAAGGGCCTGAAACAACACAGTGTGTAGCGTTTACCCGGATTGATTTCCCACCTTTGGCACGTGTGGTTCATGTTTCAGCCTCCTATAACCATGCAGCTTTTGTTATGCAATCTGGAGAGGTATTCACATGTGGAGATAATTCATCTTCGTGCTGTGGGCATAAAGATACAAGCCGACCAATTTTCAGGCCACGCCTTGTTGAATCCCTAAAGGGGATTCCTTGCAAGCAGGTTGCAGCAGGGCTTAACTTCACAGTCTTCCTCACTAGACAAGGTCATGTTTATACATGTGGAACCAACACACATGGACAACTAGGTCACGGTGACACTCAGGACAGACCAAGCCCCAAAATGATTGAAGTCCTTGGTAATGTTGGCTCTGTTGTTCAGGTTGCTGCCGGACCAAGCTATATCTTATCTGTAACAGAAGATGGAGCAGTATACTCCTTTGGATCAGGTGCTAATTTCTGTCTTGGCCATGGTGAGCAACATAACGAGTTTCAGCCACGTGCTATACAGAAATTTAGAAGGAAAGGTATTCATGTTGTCCGTGTATCTGCCGGGGATGAGCATGCAGTTGCACTTGATTCAAATGGATTTGTATATACCTGGGGCAAGGGATACTGTGGTGCTTTAGGCCATGGAGATGAGATTGAGAAGACAACACCAGAGATGTTGACTAGTCTCAAGAATCAGTTGGCTATTCAGGTTTGTGCAAGAAAGAGGAAAACCTTTGTTCTAGTTGATTCTGGTTCTGTCTATGGCTTTGGCTCCATGGGATTTGGTAGCCTCGGATTTTTGGATAGAAGGGTATCTGATAAAGTATTGAAACCTCGAATCTTAGATACCTTAAGAGCTCATCATGTTTCTCAAATTAGCACTGGCTTGTACCACACTGTGGTAATCACTAGCCGTGGACGGATATTTGGCTTTGGAGACAATGAAAGAGCTCAACTTGGTCATGACACATTAAGAGGATGCCTTGAACCCACTGAAATTTTCATAAAAGATACATCTGAAGATGATGATCCTATTTTAGCAACCATCTGA 1479 0.4375 MGDRFRPFSIEELPSHLVLEILCSGRLSATDLVCLELTSKTFGGSHGLYPFKFKSLIDFAAFQLCASHAIYSRIGLNSQRELYDRCGGNWKRVLRFLQSVEQSSEMVETSSGNMQITTGKYHTLVISNSSVYSCGSGLCGVLGQGPETTQCVAFTRIDFPPLARVVHVSASYNHAAFVMQSGEVFTCGDNSSSCCGHKDTSRPIFRPRLVESLKGIPCKQVAAGLNFTVFLTRQGHVYTCGTNTHGQLGHGDTQDRPSPKMIEVLGNVGSVVQVAAGPSYILSVTEDGAVYSFGSGANFCLGHGEQHNEFQPRAIQKFRRKGIHVVRVSAGDEHAVALDSNGFVYTWGKGYCGALGHGDEIEKTTPEMLTSLKNQLAIQVCARKRKTFVLVDSGSVYGFGSMGFGSLGFLDRRVSDKVLKPRILDTLRAHHVSQISTGLYHTVVITSRGRIFGFGDNERAQLGHDTLRGCLEPTEIFIKDTSEDDDPILATI. 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06068 492 Gene3D - 78 273 IPR009091 -
Seca4g06068 492 Pfam Regulator of chromosome condensation (RCC1) repeat 432 460 - -
Seca4g06068 492 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 288 341 IPR000408 -
Seca4g06068 492 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 328 338 IPR000408 -
Seca4g06068 492 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 235 287 IPR000408 -
Seca4g06068 492 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 342 393 IPR000408 -
Seca4g06068 492 SUPERFAMILY RCC1/BLIP-II 107 410 IPR009091 -
Seca4g06068 492 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 182 234 IPR000408 -
Seca4g06068 492 Pfam Regulator of chromosome condensation (RCC1) repeat 181 231 IPR000408 -
Seca4g06068 492 Pfam Regulator of chromosome condensation (RCC1) repeat 287 338 IPR000408 -
Seca4g06068 492 Pfam Regulator of chromosome condensation (RCC1) repeat 341 382 IPR000408 -
Seca4g06068 492 Pfam Regulator of chromosome condensation (RCC1) repeat 235 278 IPR000408 -
Seca4g06068 492 PRINTS Chromosome condensation regulator RCC1 signature 274 290 IPR000408 -
Seca4g06068 492 PRINTS Chromosome condensation regulator RCC1 signature 444 465 IPR000408 -
Seca4g06068 492 PRINTS Chromosome condensation regulator RCC1 signature 383 401 IPR000408 -
Seca4g06068 492 PRINTS Chromosome condensation regulator RCC1 signature 290 304 IPR000408 -
Seca4g06068 492 PRINTS Chromosome condensation regulator RCC1 signature 184 200 IPR000408 -
Seca4g06068 492 PRINTS Chromosome condensation regulator RCC1 signature 130 146 IPR000408 -
Seca4g06068 492 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 162 476 - -
Seca4g06068 492 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 394 448 IPR000408 -
Seca4g06068 492 CDD F-box_SF 11 42 - -
Seca4g06068 492 Gene3D - 274 486 IPR009091 -
Seca4g06068 492 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 435 445 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06068 Seca-Chr4 118493821 118500612 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06068 - - gmx:100782653 912.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g06068 4 118493821 118500612 Seca4g06068 4 118493821 118500612 ECH