Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g06060 ATGGCCGATCGCTTCTTTCCGAACGACATGCCACGCTTCGTGGCAGAGACCACACTTGAAGAAGCAAATCCCTCTCGAACACCAGCGCCAGACTCTCTCACTGCCCTCCTTTCTCTTCCTTACCAAACGCTCTCCTCAAAGCTCCAAGATGCAGCATTTCGCTTGAAAAAATCGGTGGTGAGAGAGACATGGGGGTCTAGTGGGAATCGTGTGAAGGACTATACTCTTTACACAGGGGCTCTTGGGACAGCATACCTGGTTTTCAAGGCCTACCAAGTAACCAAGAACGCGAATGATCTTAACTTATGCTTAGATATTGTTAAGGCTTGTGATTCTGCTTCAGCAAATTCTAGGTACTCTCTCTTTCTTGCATCAGAGGCTCTCATGACTTAG 393 0.4784 MADRFFPNDMPRFVAETTLEEANPSRTPAPDSLTALLSLPYQTLSSKLQDAAFRLKKSVVRETWGSSGNRVKDYTLYTGALGTAYLVFKAYQVTKNANDLNLCLDIVKACDSASANSRYSLFLASEALMT. 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g06060 130 Pfam Lanthionine synthetase C-like protein 71 122 IPR007822 GO:0031179
Seca4g06060 130 SUPERFAMILY LanC-like 65 122 - -
Seca4g06060 130 Gene3D - 1 129 IPR012341 GO:0005975
Seca4g06060 130 PANTHER LANC-LIKE PROTEIN 1 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g06060 Seca-Chr4 118316390 118317120 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g06060 - - gmx:100786158 182.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g06060 4 118316390 118317120 Seca4g06060 4 118316390 118317120 ECH