Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05918 ATGCCGTTCTCAAATGTTCATTTTTATCTTGGTGATATGCAGGGTAAGTCAACAGAGAGGCAATCTCTTATTGTAATGAAGATTAAGCATTGGGAGCGAAAGAAATGTAAACCAAACAGCCTTCCTGTCTTGCATAAAATGCATGTTAAAGTTGGAGATACTGTAAAAGTCATATCTGGACATGAAAAGGGTAAAATTGGGGAGATTACCAAGGTCTTCAAGCATAACAGCACTGTCATTGTGAAAGACTTAAATTTGAAGACAAAGCATATGAAGAGTAGAGAAGAGGGGGAACCAGGGCAAATTATCAAGATTGAAGGTGCCATCCACAGTTCAAATGTGATGCTCTACTCCAAAGAACAGAATGTAGCAAGCCGTGTGGGTCATAAAGTGCTTGATAATGGTAAAAAAGTCCGCTACCTTATAAAAACTGGAGAGATAATTGATAGTGTAGAGAATTGGAAGAAACTGAAGGAAGGTAACAAGAAAACTGAAGAAGTTGCTGCTGCTGCTTAA 516 0.3837 MPFSNVHFYLGDMQGKSTERQSLIVMKIKHWERKKCKPNSLPVLHKMHVKVGDTVKVISGHEKGKIGEITKVFKHNSTVIVKDLNLKTKHMKSREEGEPGQIIKIEGAIHSSNVMLYSKEQNVASRVGHKVLDNGKKVRYLIKTGEIIDSVENWKKLKEGNKKTEEVAAAA. 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05918 171 CDD KOW_RPL26 52 116 IPR041988 GO:0003723
Seca4g05918 171 Gene3D - 42 147 IPR014722 -
Seca4g05918 171 Pfam Ribosomal proteins 50S L24/mitochondrial 39S L24 84 148 IPR003256 GO:0003735|GO:0005840|GO:0006412
Seca4g05918 171 SMART kow_9 48 75 IPR005824 -
Seca4g05918 171 Hamap 50S ribosomal protein L24 [rplX]. 47 143 IPR003256 GO:0003735|GO:0005840|GO:0006412
Seca4g05918 171 Pfam KOW motif 51 82 IPR005824 -
Seca4g05918 171 ProSitePatterns Ribosomal protein L24 signature. 52 69 IPR005825 GO:0003735|GO:0005840|GO:0006412
Seca4g05918 171 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN L24 27 166 IPR003256 GO:0003735|GO:0005840|GO:0006412
Seca4g05918 171 NCBIfam 50S ribosomal protein L24 46 148 IPR003256 GO:0003735|GO:0005840|GO:0006412
Seca4g05918 171 SUPERFAMILY Translation proteins SH3-like domain 45 147 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05918 Seca-Chr4 114102944 114106078 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05918 K02895 - gmx:100500009 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05918 4 114102944 114106078 Seca4g05918 4 114102944 114106078 ECH