Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05893 ATGACTTCCTTCACCATGGCTCCCCTCACAAACTTGCATGGAGTCTCCAAAACTTTAATTCCCATTACATGCCTTCCAAATGCACACAAGACCCTTAGGAGAGTACAAATATTTGGATTTCTGGGAAGCAAAACACATGAACCATCAGAATGTTCAGTTCAGACTACAAAAAGAGCAGCAACCATAGGCCTTGCCACTCTACTCCTTACAGGCCAATTCAGTGACAAGATTTCACTAGCTAAAGATAATGGGTTCTGGATTGAAGGACCCCTTCCTGAACCAACTGTTACTAACAAGATTGCAAATGAGAAAACGGGGACTCGTTCTTTTATTAAGAAGAGGCTCTTCATGGCAAATATTGGAGTGAAAGGAAGTGTGCTTAGGATCAAGAAAAGTTCCTTTGATCTTCTGGCAATGGCAGATTTGGTTGCACAAGACACACTCAATTATGTGAGGAGGTACCTGAGGCTAAAGTCTACCTTCATTTACTTTGATTTTGACAAGGTCATCTCTGCTGTTCCAGTGGATGAGAAGCAGCAGTTAACTGATATGGCTAACAAATTGTTTGATAATTTTGAAAAGCTTGAAGAAGCTTCAAGGAATAAAAATCTAGCTGAAACAAAATCATGCTATCAGGAAACTGAAGTTATGCTTAAAGAGGTCATGGACAGGATGACTGAAATGTATAAAACAATTTGA 699 0.3963 MTSFTMAPLTNLHGVSKTLIPITCLPNAHKTLRRVQIFGFLGSKTHEPSECSVQTTKRAATIGLATLLLTGQFSDKISLAKDNGFWIEGPLPEPTVTNKIANEKTGTRSFIKKRLFMANIGVKGSVLRIKKSSFDLLAMADLVAQDTLNYVRRYLRLKSTFIYFDFDKVISAVPVDEKQQLTDMANKLFDNFEKLEEASRNKNLAETKSCYQETEVMLKEVMDRMTEMYKTI. 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05893 232 PANTHER OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC 42 225 IPR008797 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Seca4g05893 232 Pfam Oxygen evolving enhancer protein 3 (PsbQ) 35 225 IPR008797 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Seca4g05893 232 SUPERFAMILY Oxygen-evolving enhancer protein 3, 116 225 IPR023222 -
Seca4g05893 232 Coils Coil 178 198 - -
Seca4g05893 232 Gene3D - 88 226 IPR023222 -
Seca4g05893 232 FunFam Photosynthetic NDH subunit of lumenal location 3, chloroplastic 88 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05893 Seca-Chr4 113374444 113375845 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05893 K08901 - gmx:100814163 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05893 4 113374444 113375845 Seca4g05893 4 113374444 113375845 ECH