Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05884 ATGAAAGAGAAAAAGAGTGAGGCGAAGACAGCAACTACTGCTGAGAAGGGAGTTGAGAAGGGAGAAGAGAAGGGTGCTGCTGGGTTGGAAATGTCCAAGTTGTATAATTTGGGATGTGAACCAGTTGTGGGTACCTTGAATGCTTCGAAGAAGAGGGAGTATAGAGTCACTAATCGCCTTCAAGAGGGCAAGCGCCCTCTATACGCCGTCGTTTTCAACTTCATCGATTCCCGTTACCTCAACGTTTTCGCCACTGTTGGTGGCAATAGGGTTACTATTTATCAATGTCTTGAAGGAGGAGTTATTGCTGTTTTGCAGTCTTATGTAGATGAAGATAAGGATGAATCTTTTTACACAGTGAGCTGGGCATGCAATGTTGATGGGACCCCATTTGCTGTGGCTGGAGGAATCAATGGTGTAATCCGAGTCATTGATGCTGGCAGTGAGAAGATACACAAGAGTTTTCTTGGCCATGGGGACTCCATAAATGAAATCAGGACTCAAACTTTGAAGCCATCCCTTGTGATATCTGCAAGCAAAGATGAATCTGTCCGGTTGTGGAATGTTCATACTGGAATATGCATTTTGATATTTGCTGGAGCTGGAGGGCATCGTAATGAGGTCTTAAGTGTTGATTTCCATCCATCAGATATATATCGAATTGCCAGTTGTGGTATGGATAATACTGTAAAGATATGGTCTATGAAGGAGTTCTGGAGCTATGTAGAAAAATCATTCACATGGACAGACCTTCCTTCTAAATTTCCCACAAAATATGTGCAGTTTCCTGTAAGTAACAGTTTATTTTAG 810 0.4235 MKEKKSEAKTATTAEKGVEKGEEKGAAGLEMSKLYNLGCEPVVGTLNASKKREYRVTNRLQEGKRPLYAVVFNFIDSRYLNVFATVGGNRVTIYQCLEGGVIAVLQSYVDEDKDESFYTVSWACNVDGTPFAVAGGINGVIRVIDAGSEKIHKSFLGHGDSINEIRTQTLKPSLVISASKDESVRLWNVHTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWSYVEKSFTWTDLPSKFPTKYVQFPVSNSLF. 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05884 269 PANTHER POLYCOMB PROTEIN 34 266 - -
Seca4g05884 269 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 201 236 - -
Seca4g05884 269 MobiDBLite consensus disorder prediction 1 22 - -
Seca4g05884 269 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 155 192 - -
Seca4g05884 269 ProSiteProfiles Trp-Asp (WD) repeats profile. 201 236 IPR001680 GO:0005515
Seca4g05884 269 SMART WD40_4 148 188 IPR001680 GO:0005515
Seca4g05884 269 SMART WD40_4 98 145 IPR001680 GO:0005515
Seca4g05884 269 SMART WD40_4 191 234 IPR001680 GO:0005515
Seca4g05884 269 SUPERFAMILY WD40 repeat-like 58 237 IPR036322 GO:0005515
Seca4g05884 269 ProSitePatterns Trp-Asp (WD) repeats signature. 175 189 IPR019775 -
Seca4g05884 269 Gene3D - 48 268 IPR015943 GO:0005515
Seca4g05884 269 ProSiteProfiles Trp-Asp (WD) repeats profile. 155 197 IPR001680 GO:0005515
Seca4g05884 269 Pfam WD domain, G-beta repeat 153 188 IPR001680 GO:0005515
Seca4g05884 269 Pfam WD domain, G-beta repeat 202 234 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05884 Seca-Chr4 113080664 113084361 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05884 K11462 - gmx:100795288 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05884 4 113080664 113084361 Seca4g05884 4 113080664 113084361 ECH