Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05881 ATGCTGGAAATCATAGACATAAAAAAGCTTTCATCTGCCAAATCTGTAGTGAAAATATTTCAGGAATTTGGAAGGCTACTATTGGAACCTGTTGTGGAGAAGTTCCTTTTGGACTTCAAAACTAGTAATCATGAAGCAGATAATATTACAAACTTCATCACAAGTTATGCTGTTAGCATTCCAAATTTATTGGTTGAGGATGTCATAAAAAAATTCAAGGATTTGCACCAAAGACTAGAAGTTTCACCTTCTTCCTCATCATATGAGAAGCTCATTTTACATAGCTGTGCATTGCTCAAGGTACATGTAGCTCTTGATATTGTTGATGAAATGTGTGAAGCAGGCTTGACTTTATCAACTGAGGTGCTACACTCCATATTACAAACTTGTGATGAAACATCTGAATATAATTTGGTCCATCGGATCTTCTCTACCACACGTCACTACAATTTGGAATCAAATGAGAAAACATTCAGATATATGATAGACTTGTTCTTGAAGATGAAAGATATTGAAGGTGCATATAAGATGCTTGATGATTTGAAGGAAATACATGTGAATCCAACAACAGGCATGTACAATGCCATAATGGCAGAATGTTTTCTAGAGAAAAACATTGATGGGGTGAGGGTCCTTGAGCACATGCTATGTTCTGGTATAAAACCTGATTCACAGACTTTCAGCTACCTGATTAGCAACTCTGAAACTGAAGAGGATATAGTGAAATACTATGAAGAATTGAAACAATCTGGAATCAGAGCTACAAAGCAAATTTTCATGGCGCTTATAAATGCTTATGCTGCTTGTGGACAGTTGGAGAAAGCAAAACAGGTAATCTTAGATCCATTGATGCCTGTGAAGAGCTTGAACCAAATCAAGAGTGTTCTTGTCTCAGTTCTTGCATCACATGGGCAATTGTCTGAGGCTCTTCTTATCTATGATGAAATCAAGCAAGCTGGGCACAATTTGGAGCCAAAAGATGTTCTGAGTCTCATTGAGCACACTCGTTCTGATGGAGAGTTGGATACGTTGCTTCTGCTACTCAAGGAATTGACTGATACAGACTTTTGGAATGATGCTTGCTGTAGAATCATCCTGTATTGTATTTGGAATAAGCATTTAAGTTCTGCTGTTGACTTGTGTAAGCTCCTCAAGGACAAGTTCCAAAATGATGAACTAGTGATGGAAGTTCTCTTTGACAAGGTATTCTCTCTAATTGAAAAGTCAGAGTCCAATCATTTGACTTGCCTCAAGTTGCTTTCGGAAATCAAGGATAAGCTTGGCCTTTTGCCTTCACAGAAATGTCAGGATTCTCTGCTAGGTGCTCGTGCCAACGCCATTAGGCCACTCATTCACATAATGCTGAATAAGGCTCCTTAA 1380 0.3819 MLEIIDIKKLSSAKSVVKIFQEFGRLLLEPVVEKFLLDFKTSNHEADNITNFITSYAVSIPNLLVEDVIKKFKDLHQRLEVSPSSSSYEKLILHSCALLKVHVALDIVDEMCEAGLTLSTEVLHSILQTCDETSEYNLVHRIFSTTRHYNLESNEKTFRYMIDLFLKMKDIEGAYKMLDDLKEIHVNPTTGMYNAIMAECFLEKNIDGVRVLEHMLCSGIKPDSQTFSYLISNSETEEDIVKYYEELKQSGIRATKQIFMALINAYAACGQLEKAKQVILDPLMPVKSLNQIKSVLVSVLASHGQLSEALLIYDEIKQAGHNLEPKDVLSLIEHTRSDGELDTLLLLLKELTDTDFWNDACCRIILYCIWNKHLSSAVDLCKLLKDKFQNDELVMEVLFDKVFSLIEKSESNHLTCLKLLSEIKDKLGLLPSQKCQDSLLGARANAIRPLIHIMLNKAP. 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05881 459 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 154 188 IPR002885 -
Seca4g05881 459 Gene3D Tetratricopeptide repeat domain 62 208 IPR011990 GO:0005515
Seca4g05881 459 Gene3D Tetratricopeptide repeat domain 209 377 IPR011990 GO:0005515
Seca4g05881 459 PANTHER OS02G0132600 PROTEIN 1 446 - -
Seca4g05881 459 Pfam PPR repeat 259 279 IPR002885 -
Seca4g05881 459 Pfam PPR repeat 295 320 IPR002885 -
Seca4g05881 459 Pfam Pentacotripeptide-repeat region of PRORP 93 248 IPR033443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05881 Seca-Chr4 113001057 113016264 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05881 82 351 Glycosyltransferase AT1G05670 22.222 4.68e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05881 - - gmx:100306302 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05881 4 113001057 113016264 Seca4g05881 4 113001057 113016264 ECH