Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05540 ATGAAGATTGCTTCCTTCTTCACCAAGGCTTTCCACAGCTTCCCTTCCTACTCCAAGATCGTGCTCCTCTGCACTCTCAGTGGTGGCGGTGTGGTGTCATACTCAGAATTACAATCAAATACTAAACCTCCTGTTATAGATCCTAATGAGCCAAAGAAAAAGAAAGTGGTGGTTCTTGGAACAGGATGGGCTGGTACCAGTTTCTTGAAGGATCTCGATGCATCCCTATATGATGTTCAGGTTGTTTCACCACGTAACTACTTTGCATTCACTCCTCTATTACCCAGTGTCACTTGTGGGACTGTTGAAGCAAGAAGCATTGTGGAGCCAGTCAGAAACATCATAAAAAAGAGAAAAGGAGAAATTAAATTTTGGGAGGCAGAATGCCTGAAGATTGATAATGCAAACAAAAAGGTTTTATGTCGGTCCCATATTGACAACAATTTAGTGGGAAGTGGCGAATTTGCTTTGGACTATGACTACTTGGTTATAGCAATAGGAGCGCAAGTAAACACATTTAACACCCCTGGTGTCAGGGAGAATTGTCATTTTCTGAAGGAGGTAGAGGATGCTCAGAAGATCAGAATGTCTGTGATAGATTGCTTTGAGAAGGCTGTTCTTCCATCTCTATCTGAAGAAGAACGTAGGACAAATCTGCATTTTATAGTTGTTGGAGGGGGTCCAACTGGTGTGGAATTTGCTGCTGAGCTTCATGACTATATCCAAGAAGATTTAGTCAAATTATACCCATCTGTCAAAGATATAGTGAAGATAACAATGATTCAATCAGGAGATCATATCTTGAACACGTTTGATGAAAGAATTAGTGCATTTGCTGAGCACAAGTTTGGAAGAGATGGTATAGAAGTTCAAACGGGATGTCGAGTTGTCAATGTTAATGACAAGGAAATTACAGTAAAAGTGAAATCAACAGGAGAGTTTTGTTCTGTACCCCATGGATTGGTTGTTTGGTCCACTGGAATTGCAACTCGTCCAGTTGTGAGAGACTTTATGGAACAAATTGGTCAGGCTGAAAGGAATGTCCTAGCAACAAATGAATGGCTGCGAGTAAAGGAATGTGAAACTGTGTATGCTATTGGCGATTGTTCTTCAATAGTTCAACGTAAAATTATGGACGACATCTCAGAAATTTTTGAAGCTGCAGACAGAGACAACTCTGGTACCTTAACTATTGAGGAATTCAATGATGTGATGGATGATATCATCGTAAGATATCCACAAGTTGAACTCTACTTGAAGAGCCAACATGTGATTGATTTGGCTGCTATGTGGAGAGATTCCCAAGGAAATGAGAAAAAAGAAATAGACATAGAAGGGTTTAAGCTGGCCCTTTCTCATGTGGATGCACAGATGAAGAGTCTACCAGCAACTGCACAGATTGCTGCTCAACAAGGTGCATATCTTGCTAGATGCTTTAACCGCATGGATCAGTGTGCAGAGAATCCTGAAGGTCCTCGACGATTTGGTGGATCTGGACGCTATAAGTTTCGTCCTTTCCGGTAA 1524 0.4114 MKIASFFTKAFHSFPSYSKIVLLCTLSGGGVVSYSELQSNTKPPVIDPNEPKKKKVVVLGTGWAGTSFLKDLDASLYDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIIKKRKGEIKFWEAECLKIDNANKKVLCRSHIDNNLVGSGEFALDYDYLVIAIGAQVNTFNTPGVRENCHFLKEVEDAQKIRMSVIDCFEKAVLPSLSEEERRTNLHFIVVGGGPTGVEFAAELHDYIQEDLVKLYPSVKDIVKITMIQSGDHILNTFDERISAFAEHKFGRDGIEVQTGCRVVNVNDKEITVKVKSTGEFCSVPHGLVVWSTGIATRPVVRDFMEQIGQAERNVLATNEWLRVKECETVYAIGDCSSIVQRKIMDDISEIFEAADRDNSGTLTIEEFNDVMDDIIVRYPQVELYLKSQHVIDLAAMWRDSQGNEKKEIDIEGFKLALSHVDAQMKSLPATAQIAAQQGAYLARCFNRMDQCAENPEGPRRFGGSGRYKFRPFR. 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05540 507 ProSitePatterns EF-hand calcium-binding domain. 389 401 IPR018247 -
Seca4g05540 507 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509
Seca4g05540 507 SUPERFAMILY FAD/NAD(P)-binding domain 53 272 IPR036188 -
Seca4g05540 507 Gene3D - 44 391 - -
Seca4g05540 507 PANTHER NADH DEHYDROGENASE 49 507 IPR045024 GO:0003954|GO:0006116
Seca4g05540 507 Pfam Pyridine nucleotide-disulphide oxidoreductase 54 372 IPR023753 GO:0016491
Seca4g05540 507 SUPERFAMILY EF-hand 334 461 IPR011992 -
Seca4g05540 507 SUPERFAMILY FAD/NAD(P)-binding domain 218 373 IPR036188 -
Seca4g05540 507 PRINTS FAD-dependent pyridine nucleotide reductase signature 220 238 - -
Seca4g05540 507 PRINTS FAD-dependent pyridine nucleotide reductase signature 159 177 - -
Seca4g05540 507 PRINTS FAD-dependent pyridine nucleotide reductase signature 56 75 - -
Seca4g05540 507 SMART efh_1 380 408 IPR002048 GO:0005509
Seca4g05540 507 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 46 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05540 Seca-Chr4 104558500 104563132 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05540 56 507 EF-hand Containing Proteins AT4G28220 71.681 0.0 705
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05540 K03885 - gmx:100793566 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05540 4 104558500 104563132 Seca4g05540 4 104558500 104563132 ECH