Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05197 ATGGTCATAAACCTCTCTCCCTCTCCACCTTCACATTCCAGTTCCATTATCAGATTAGCCAATTCAAAGTCACCCATCTCACAACCTTCGGTTAAGCTCAAAACCCACTTCCCAAAACCGCTTTTTTCTCCTTCTTTTGCTTCCCCAAACGCGAACTTCACCTGCAAGAAGCAGTTTTTGCATGACAACAGCAGATGCACACATGGAAATAGGGTGGATTTTAGGACCTGCGCTTTTGCTGGATTTGATTATGGGAACTTCGAGGGTCCTCAGTCTGTTCTTGAGGCTGCTGCAGTGTTGACAGCCATTATTGTTGTTCATGAGAGTGGTCACTTCCTTGCTGCTTCTCTCCAAGGCATCCATGTGAGTAAATTTGCTGTTGGGTTTGGTCCAATATTAGCTAAGTTTAATGCAAAGAATGTAGAATATTCCATTAGAGCTTTTCCTCTTGGTGGGTTTGTGGGGTTTCCTGATAATGATCCAGAGAGTGATATTCCTGTTGATGATGAAAACTTGCTTAAGAACAGACCAATATTAGATAGAATCATTGTGGTTTCAGCTGGTGTTATTGCCAATATAGTTTTTGCCTTAGTCATTATCTTTGTCCAAATCCTTGCGGTTGGTTTGCCTGTGCAAGAGGTCTTTCCTGGGGTGAGTGTGCCTGAAGTTAGACCCTTTTCAGCTGCTTCTCGAGATGGGTTGCTTCCTGGGGATGTGATCCTTGAAGTCAATGGAAATGAGTTTCCTAAACCAGGTCCTAATGCTGTTTCTGAAGTTGTTGATGTCATCAAGAGGAACCCCAAGAGATATGTTCTGCTCAAGGTTAAGAGGGGGGAGCAGGACTTTGAAATAGGGGTCACTCCTGATGAGAATTTTGATGGAACTGGTAAAATTGGAGTTCAGCTATCACCAAATGTAAAGTTTGCTAAGGTTAGACCAAAAAATCTGCTTGAAGCTATGAGGTTTACTGCAAAAGAATTCTGGGGTCTATCATCTAATGTTTTAGATGGCTTAAGGCAGACATTTTTAAACTTCTCTCAATCAGCTAGTAAGGTTTCAGGTCCTGTAGCTATTATAGCTGTTGGTGCAGAAGTTGCAAGGTCAAACATTGATGGTCTCTACCAATTTGCTGCCATACTCAATATTAACCTTGCTGTTATAAACCTTCTTCCTTTGCCTGCTTTGGATGGGGGTACATTGGCATTGATTCTTATTGAGGCTGCCAGGGGTGGCAGAAAACTACCTCTAGAAGTGGAGCAACGGATCATGTCATCAGGAATTATGCTTGTTATAATTCTGGGGTTATACCTTATTGTCCGTGATACCCTAAACCTTGATTTTATCAAAGATTTGTTGTAA 1359 0.4194 MVINLSPSPPSHSSSIIRLANSKSPISQPSVKLKTHFPKPLFSPSFASPNANFTCKKQFLHDNSRCTHGNRVDFRTCAFAGFDYGNFEGPQSVLEAAAVLTAIIVVHESGHFLAASLQGIHVSKFAVGFGPILAKFNAKNVEYSIRAFPLGGFVGFPDNDPESDIPVDDENLLKNRPILDRIIVVSAGVIANIVFALVIIFVQILAVGLPVQEVFPGVSVPEVRPFSAASRDGLLPGDVILEVNGNEFPKPGPNAVSEVVDVIKRNPKRYVLLKVKRGEQDFEIGVTPDENFDGTGKIGVQLSPNVKFAKVRPKNLLEAMRFTAKEFWGLSSNVLDGLRQTFLNFSQSASKVSGPVAIIAVGAEVARSNIDGLYQFAAILNINLAVINLLPLPALDGGTLALILIEAARGGRKLPLEVEQRIMSSGIMLVIILGLYLIVRDTLNLDFIKDLL. 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05197 452 CDD S2P-M50_PDZ_RseP-like 93 444 - -
Seca4g05197 452 SUPERFAMILY PDZ domain-like 177 280 IPR036034 GO:0005515
Seca4g05197 452 Pfam Peptidase family M50 97 433 IPR008915 GO:0006508
Seca4g05197 452 Pfam PDZ domain 221 277 IPR041489 -
Seca4g05197 452 ProSiteProfiles PDZ domain profile. 207 278 IPR001478 GO:0005515
Seca4g05197 452 SMART pdz_new 205 279 IPR001478 GO:0005515
Seca4g05197 452 Gene3D - 210 303 IPR036034 GO:0005515
Seca4g05197 452 CDD PDZ_metalloprotease 205 288 - -
Seca4g05197 452 PANTHER REGULATOR OF SIGMA-E PROTEASE RSEP 88 448 IPR004387 GO:0004222|GO:0006508|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05197 Seca-Chr4 97143296 97144654 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05197 - - lang:109351773 764.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05197 4 97143296 97144654 Seca4g05197 4 97143296 97144654 ECH