Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05193 ATGCCAGAAAGGAGGCAGGCTGAAGCAGCTCGCATAAGAGAGAAGTATCCTGATAGAATTCCGGTAATTGTTGAAAGGGCAGAGAAGAGTGATGTTCCTGAAATTGATAAGAAAAAGTTAGTTTCTTCTATTCTTCGGAAAGGACAATTGTATCTTGTTCCTGCTGATTTGACTGTTGGCCAGTTTGTGTATGTGGTGCGCAAGAGAATCAAGCTGAGTCCTGAGAAGGCTATCTTCATTTTTGTCAAGAACATTTTACCACCAACTGCCGCTATGATGTCTGCAATTTATGAGGAAAATAAGGATGAAGATGGATTCCTATATATGACCTACAGTGGGGAGAACACATTTGGGATGATGATCTGA 366 0.4098 MPERRQAEAARIREKYPDRIPVIVERAEKSDVPEIDKKKLVSSILRKGQLYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGMMI. 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05193 121 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 3 119 IPR004241 -
Seca4g05193 121 SUPERFAMILY Ubiquitin-like 3 118 IPR029071 -
Seca4g05193 121 Pfam Autophagy protein Atg8 ubiquitin like 4 118 IPR004241 -
Seca4g05193 121 CDD Ubl_ATG8 3 115 - -
Seca4g05193 121 Gene3D - 1 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05193 Seca-Chr4 97075786 97079074 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05193 K08341 - gmx:100301895 197.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05193 4 97075786 97079074 Seca4g05193 4 97075786 97079074 ECH