Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05190 ATGACTTGTTTACAACTTTTCACGAAGGAGATTGAAGCTTCTCCTGGAGAATCTGCTGCATTATCATTATTTTCACGTCATGTGAGCAGTCAAGGCTTTCCTTCGATTTCCAATGAAACCCAGTATGCTGTGAGGCAACTGTGCACATGGAGAGATCTGATGGCTCGCATACATGATGAGAGCTTAAAATATGTACTGTCAGACCAGGCAATTGTTGCTTTGGCAAGTCGGCCTCCAGCAAATCACTCTGAAACATACGACACCATAGCTCAGACTGATAGCAATGTGGAAATGGGTCCCAACTCTTTCATTCCTTCCCCATCCCCTGTTGTTTGCAACCATCTGAGTGATATCCATGACCTGCTTGCAAACAAGTTGGTTAATGATGGCGATATTTATTCAGTGATTCTTCAGAAGTGTCTAGGTCAAAATGGGAGTTGTCAACTCTCTATTTTTAATTATGCTTTGTTGGTTAACAGTAACCTGCGACCTACTTTTGCCTATAAGCACTCAAGCTTAAAAAATCCTAAACAATTTTCCCGGAAGGCTTCTCGAGATTTGTTTGTTCAAAAATTCTCTTGCAAATCTCCTGTTTATCACAATTGCCGGATATATGCTAATGATGGGAGGTTGCTTTGTTATTGTGATCGGAAGAAGCTTGAATGGTACCTTAGTCGAGATCTTGCAAAACTTATTGATGAGGACCCCCCAGCTATAATGCTTCTTTTTGAACCCAAAGGCCGCCCAGAGGATGAAGACAATGACTTTTATATCCAGAGCAAGAAAAATATATGTGTTGGGTGCGGCGAAGGAAATCACTACTTACGGTATCGAATAATCCCATCATGTTACAGAATACATTTCCCTGAGCATTTGAAAAGCCATCGTTCTCATGATATTGTCCTACTTTGTGTGGATTGCCATGAAGTTGCCCATGCTGCTGCAGAGAAGTATAAGAGAAAAATATCTGCTGAGTTTGGGATTCCTCTCTATGTTCGAAAGGTAATTCATCCAGGGAAAGAGACTGGAAAACAAGTTGAGGAGGGAGGTGCATCTCCATTACAGTTACGAACAGCCGCTATGGCACTTGTACGCCATGGACCGAGAATGCCTGTCAATCGGCGTGAAGAACTGACTGAGATTGTAAGGAGATATTATGGAGGGAGGGAGATATCTGAGGAAGATCTAGAAAAAGCTTTACAAGTTGGCATGAGTCCTCATGAGAGAAGACGATTTGAGAAGAAGAGAGGGTTTTCTTTTAGGCATTCTATGGGGAGTACTGCTGCAGCGCCAGAACAGGAGAATCATGCTGGTTATCCACCCAGAATGAGTGATGTGGACACATTGAATCTTGATGCTCTTGATGGTTCATATGCAAATGGAGAAACAAGTGAAGTAGATGGAGAACATTTGACAGAAAAAAATAGTTTAGGAAACCCCTCTCTAACTTCTAATCTTGCAGTTGATGGAGCTACTTCAAATGGAAATAGCATCGCTGTGAAAACTACAGACTATAATGAAAGCAGTGACTCCGCTGTAAATGTTAATAGCTGTCTGAGTATAAGGCAATCTAACGGAGTTAGTGACTTCTGTTATCCCCCTAAGGATGAAGACTCGACACAAGCTAAACATAATTCGAAACTATCACTCTTGGGACATGGACCACATGGGAAACAAGTTGTAGAACATTTACTGAAGGAGTATGGTGAAGAGGGCATTCGGGAATTTTGTCAAAGATGGAGACAAGTATTTGTGGAAGCTGTAAAGCCACGTTTTCTTCCTTCTGGTTGGGATGTAAAACATAGTGGAAGAAGGGAGTTCGGCCAATTCAGCGTATACAATCCTGACAAAAGAGTGGCTGCTGTTAGTACGGAGTAA 1878 0.4191 MTCLQLFTKEIEASPGESAALSLFSRHVSSQGFPSISNETQYAVRQLCTWRDLMARIHDESLKYVLSDQAIVALASRPPANHSETYDTIAQTDSNVEMGPNSFIPSPSPVVCNHLSDIHDLLANKLVNDGDIYSVILQKCLGQNGSCQLSIFNYALLVNSNLRPTFAYKHSSLKNPKQFSRKASRDLFVQKFSCKSPVYHNCRIYANDGRLLCYCDRKKLEWYLSRDLAKLIDEDPPAIMLLFEPKGRPEDEDNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEVAHAAAEKYKRKISAEFGIPLYVRKVIHPGKETGKQVEEGGASPLQLRTAAMALVRHGPRMPVNRREELTEIVRRYYGGREISEEDLEKALQVGMSPHERRRFEKKRGFSFRHSMGSTAAAPEQENHAGYPPRMSDVDTLNLDALDGSYANGETSEVDGEHLTEKNSLGNPSLTSNLAVDGATSNGNSIAVKTTDYNESSDSAVNVNSCLSIRQSNGVSDFCYPPKDEDSTQAKHNSKLSLLGHGPHGKQVVEHLLKEYGEEGIREFCQRWRQVFVEAVKPRFLPSGWDVKHSGRREFGQFSVYNPDKRVAAVSTE. 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05190 625 Pfam HRDC domain 44 83 IPR002121 GO:0003676
Seca4g05190 625 Gene3D HRDC domain 27 130 IPR044876 -
Seca4g05190 625 MobiDBLite consensus disorder prediction 423 447 - -
Seca4g05190 625 SUPERFAMILY HRDC-like 35 91 IPR010997 GO:0000166|GO:0044237
Seca4g05190 625 ProSiteProfiles HRDC domain profile. 37 117 IPR002121 GO:0003676
Seca4g05190 625 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 2 618 IPR045092 GO:0000175|GO:0000467
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05190 Seca-Chr4 96956438 96963497 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05190 K12951 - gmx:100791485 1002.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05190 4 96956438 96963497 Seca4g05190 4 96956438 96963497 ECH