Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05187 ATGTATATAACGGCCTCTTCCGCTACCTCTTCGCTTCTCAGAACAACAAGGCCTAAACTCTTTTCTTCTTCTAGAACCTTCGTCTATCCTCCTTCTTTAACTGCCTACTCATCCCGCAGTTCCTTCTCTTCTCGATCCTTCCGCTCCTCCGTTCCTCGTTGGAGCCATCGCCTCCATTCGAACTCTCCGTTCATTCTTCGTCCTCAGGTCAGAGCCGTTGCTCCCGTCGTCGAACGCTTCCACCGCAAGATCGCTACCATGGCCAATGACAATCCTTTCAAGGGTAACTTGACAAGTCTCCCCAAGCCCGGTGGTGGCGAGTTTGGAAAATTCTACAGTCTTCCTTCTCTCAACGATCCAAGAGTTGATAGGTTACCATACTCCATCAGAATTCTCCTTGAATCTGCCATTCGTAATTGTGACAATTTCCAAGTAACTAAAGAAGATGTTGAGAAGATTCTGGACTGGGAAAACAATTCTTCAAAGCAAGTTGAGATTCCTTTCAAGCCTGCTCGTGTGCTCTTGCAGGATTTTACTGGAGTCCCAGCTGTTGTTGACCTGGCTTGCATGCGAGATGCTATGAATAAGCTTGGCAGTGATTCAAATAAGATCAATCCTCTGGTTCCTGTTGATCTTGTCATCGATCATTCAGTTCAAGTTGACATAGCAAGGTCAGAAAATGCAGTGCAGGCTAATATGGAACTTGAATTCCAGAGAAACAAGGAGAGATTTGCTTTTCTTAAATGGGGTTCAAATGCATTCCTTAACATGCTTGTTGTTCCTCCTGGTTCTGGTATAGTACATCAGGTCAATCTTGAATATCTTGGATGGGTTGTTTTCAACAATGAGGGCTTACTGTATCCTGACAGTGTGGTTGGGACTGATTCACATACAACTATGATAGATGGGCTTGGTGTTGCTGGATGGGGTGTTGGAGGTATTGAAGCTGAGGCAGCAATGCTTGGTCAGCCAATGAGCATGGTTTTGCCTGGTGTTGTCGGGTTCAAGTTATCTGGAAAACTGCGCAATGGTGTTACAGCAACTGACTTGGTTCTAACTGTAACACAAATTCTTAGAAAACATGGTGTTGTAGGGAAATTTGTTGAATTTTATGGTGATGGTGTGGGTGAATTATCTTTAGCTGACAGAGCTACTATTGCTAATATGTCTCCTGAATATGGTGCCACCATGGGCTTCTTCCCTGTGGATCATGTTACATTACAATATCTCAAGCTAACTGGACGAAGTGATGAGACTGTGGCCATGATAGAGTCTTATCTCAGGGCAAACAAGCTGTTTGTTGACTATAGTGAGCCACAACAAGACAGAGTTTATTCATCGTATCTTGAATTAAACCTTTCTGCTGTTGAACCATGTATCTCAGGACCAAAGAGACCTCATGATCGGGTGCCTTTGAAAGAAATGAAGGCTGACTGGCATGCTTGTCTTGATAACAAAGTTGGATTTAAGGGATTTGCAATACCAAAAGAGGCACAAGGAAAAGTTGCAAAGTTTGATTTCCATGGGCAACCAGCGGAGCTCAAGCATGGTAGCATTGTTATTGCTGCAATCACAAGCTGTACAAATACATCAAATCCAAGTGTTATGCTTGGGGCTGGTCTTGTTGCAAAAAAGGCTCATGAGCTTGGTTTGCAGGTCAAGCCTTGGGTTAAAACAAGTCTTGCTCCAGGCTCTGGAGTTGTTACGAAATATCTACTCCAGAGTGGACTGCAAAAATATCTAAATGAACAAGGTTTTCATATTGTTGGATTTGGCTGTACAACATGTATTGGCAATTCAGGGGAGCTGGATGAATCCGTTGCTTCTGCTATCTCAGAAAATGACATTGTAGCAGCTGCTGTGTTGTCTGGGAACCGTAATTTTGAGGGCCGTGTGCATCCCTTGACTAGAGCTAACTACCTTGCCTCACCTCCTCTAGTTGTTGCTTATGCTCTTGCTGGCACGGTTGATATTGACTTTGAGAAGGAGCCAATTGGGACCGGGAAGGACGGCAAGAATGTCTACTTGAGGGATATCTGGCCATCTACTGAAGAAATTGCCGAGGTTGTTCAATCTAGTGTGTTGCCTGACATGTTCCGAAGTACATATGAGGCTATTACCAAGGGCAACCCTATGTGGAATCAACTACAAGTTCCTGCTGACACTCTCTACTCATGGGATCCCAGCTCAACATATATTCATGAACCTCCATACTTCAAGAACATGACCATGGATCCTCCTGGACCTCATGGTGTGAAAGATGCCTATTGCCTGCTGAACTTTGGTGACAGTATAACCACTGATCATATTTCTCCAGCTGGAAGCATTCACAAGGACAGTCCTGCTGCTAAATACCTTCTAGAGCGTGGGGTGGAACGCAAGGACTTCAATTCTTATGGTAGTCGTCGAGGCAACGATGAGGTGATGGCGAGAGGCACTTTTGCCAACATTCGCCTTGTTAACAAGCTCTTGAATGGGGAAGTTGGCCCCCAGACAATTCACATTCCAACTGGGGAGAAGCTTTATGTGTTTGATGCAGCAATGAGATACAAGGCTTCTGGGCAAGGCACCATTGTGCTGGCTGGAGCTGAATATGGCAGTGGAAGTTCTAGAGATTGGGCTGCCAAGGGTCCAATGTTATTGGGAGTTAAAGCTGTGATAGCTAAAAGTTTTGAGAGAATTCATCGCAGCAATTTGGTAGGAATGGGTATAATTCCTCTTTGCTTCAAACCTGGGGAGGATGCGGACACATCGGGATTGACCGGTCATGAACGTTATACAATTGACCTCCCAAGTAAAATCAGTGAGATCAGGCCTGGCCAAGATGTCACAGTCACAACGGATAATGGAAAATCTTTCACCTGCACAGTACGCTTTGACACTGAGGTGGAGCTTGCTTACTTCAACCACGGAGGCATACTTCCATATGTCATTCGGAACCTCATTAAACAGTGA 2955 0.4481 MYITASSATSSLLRTTRPKLFSSSRTFVYPPSLTAYSSRSSFSSRSFRSSVPRWSHRLHSNSPFILRPQVRAVAPVVERFHRKIATMANDNPFKGNLTSLPKPGGGEFGKFYSLPSLNDPRVDRLPYSIRILLESAIRNCDNFQVTKEDVEKILDWENNSSKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDIARSENAVQANMELEFQRNKERFAFLKWGSNAFLNMLVVPPGSGIVHQVNLEYLGWVVFNNEGLLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRNGVTATDLVLTVTQILRKHGVVGKFVEFYGDGVGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMIESYLRANKLFVDYSEPQQDRVYSSYLELNLSAVEPCISGPKRPHDRVPLKEMKADWHACLDNKVGFKGFAIPKEAQGKVAKFDFHGQPAELKHGSIVIAAITSCTNTSNPSVMLGAGLVAKKAHELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGFGCTTCIGNSGELDESVASAISENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKNVYLRDIWPSTEEIAEVVQSSVLPDMFRSTYEAITKGNPMWNQLQVPADTLYSWDPSSTYIHEPPYFKNMTMDPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVERKDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPQTIHIPTGEKLYVFDAAMRYKASGQGTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADTSGLTGHERYTIDLPSKISEIRPGQDVTVTTDNGKSFTCTVRFDTEVELAYFNHGGILPYVIRNLIKQ. 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05187 984 ProSitePatterns Aconitase family signature 2. 585 598 IPR018136 -
Seca4g05187 984 SUPERFAMILY Aconitase iron-sulfur domain 105 719 IPR036008 -
Seca4g05187 984 ProSitePatterns Aconitase family signature 1. 519 535 IPR018136 -
Seca4g05187 984 PRINTS Aconitase family signature 362 375 IPR001030 -
Seca4g05187 984 PRINTS Aconitase family signature 300 315 IPR001030 -
Seca4g05187 984 PRINTS Aconitase family signature 257 265 IPR001030 -
Seca4g05187 984 PRINTS Aconitase family signature 458 472 IPR001030 -
Seca4g05187 984 PRINTS Aconitase family signature 233 246 IPR001030 -
Seca4g05187 984 PRINTS Aconitase family signature 286 299 IPR001030 -
Seca4g05187 984 PRINTS Aconitase family signature 585 598 IPR001030 -
Seca4g05187 984 PRINTS Aconitase family signature 523 534 IPR001030 -
Seca4g05187 984 PRINTS Aconitase family signature 376 389 IPR001030 -
Seca4g05187 984 CDD AcnA_IRP 172 656 - -
Seca4g05187 984 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 85 981 IPR006249 -
Seca4g05187 984 FunFam Aconitate hydratase 747 983 - -
Seca4g05187 984 Pfam Aconitase C-terminal domain 783 910 IPR000573 -
Seca4g05187 984 Gene3D Aconitase, domain 3 90 458 IPR015931 -
Seca4g05187 984 FunFam cytoplasmic aconitate hydratase 459 682 - -
Seca4g05187 984 FunFam Aconitate hydratase 91 458 - -
Seca4g05187 984 NCBIfam aconitate hydratase AcnA 109 982 IPR006249 -
Seca4g05187 984 SUPERFAMILY LeuD/IlvD-like 723 982 - -
Seca4g05187 984 Gene3D - 683 744 - -
Seca4g05187 984 Pfam Aconitase family (aconitate hydratase) 151 654 IPR001030 -
Seca4g05187 984 Gene3D Aconitase, domain 4 747 983 IPR015928 -
Seca4g05187 984 Gene3D Aconitase, domain 3 459 682 IPR015931 -
Seca4g05187 984 CDD AcnA_IRP_Swivel 760 930 IPR044137 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05187 Seca-Chr4 96915682 96924328 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05187 K01681 - gmx:100778506 1823.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05187 4 96915682 96924328 Seca4g05187 4 96915682 96924328 ECH
Seca4g05187 4 96915682 96924328 Seca4g05187 4 96915682 96924328 PCT