Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05167 ATGGCTGCATCATCAATCTTTGTGCCTTCATCCCAGATAATGGAAGAAGAAGCCAGGTTTGAAGCTGAAGTGGCAGAGGTGCAAGCATGGTGGAACTCTGAGAGATTCAGGCTAACCCAACGACCATACTCAGCTAGAGATGTGGTTTCCCTAAGAGGCAACCTTAGACAAACCTATGGCTCAAATGAGATGGCAAAAAAGCTATGGAGAATTCTCAAAACCCACCAAGCCAATGGCACAGCCTCAAGGACTTTTGGTGCACTTGACCCAGTTCAGGTCACCCAAATGGCTAAGCACTTGGACACCATTTATGTCTCTGGGTGGCAGTGTTCAGCCACTCACACCACCTCCAATGAACCTGGCCCAGACCTTGCTGATTACCCTTATGACACTGTCCCCAACAAGGTTGAACATTTATTCTTTGCTCAGCAATACCATGACAGGAAACAAAGAGAGGAGAGAATGAACATGAGCAGAGAAGAGAGAGCAAGAACCCCTTATGTTGATTACTTGAGACCAATCATAGCTGATGGTGACACTGGTTTTGGTGGCACCACAGCAACTGTTAAGCTTTGTAAGCTCTTTGTGGAGCGTGGTGCAGCTGGTATCCACATTGAGGACCAATCTTCTGTCACAAAAAAATGTGGCCACATGGCAGGGAAAGTGTTGGTTGCAATCAGTGAGCATATCAATAGGCTTGTGGCTGCAAGGTTGCAATTTGATGTCATGGGGGTGGAAACAGTTTTGGTGGCTCGAACTGATGCAGTTGCTGCTAATCTCATTCAATCCAATATTGACACAAGGGATCATCAGTTTATCATGGGTGTGACTAATCCAAGCCTAAAAGGAAAGAGCTTGGCAACTCTTATGGCACAAAGCATGGCTGCTGGTAAGAATGGAGCTCAACTTCAGGCTTTGGAGGATGAGTGGCTATCAATGGCAAAGTTGAAGACTTTCTCAGAAGCAGTTGTGGATGGAATTAAGAATCTGAACATTGGAGAGGAAGAGAAAAGGAGGAGGTTGAATGAATGGTTGGAATGTTCAAGTTATGAGAAGTGTCTTTCCAATGAAGAAAGCAGAGAGATTGCTGATAGGTTAGGTGTAAGAAACCTGTTTTGGGACTGGGATTTGCCAAGAACAAGAGAAGGATTTTACAGGTTCAAAGGGTCAGTGGCTGCTGCAGTTGTTCGTGGCTGGGCTTTTGCACCACATGCTGATCTTATCTGGATGGAAACTGCTAGTCCCAATGTGGTTGAGTGCACACAATTTGCTGAAGGGGTTAGATCAAAGTACCCTGAGATGATGCTGGGTTACAATCTTTCTCCATCTTTCAATTGGGATGCTTCTGGCATGACTGATGAGCAAATGAGAGACTTTATTCCCAGAGTTGCACAATTGGGGTATGTGTGGCAGTTCATAACAGTGGGTGGTTTGCACTCTAATGCTCTCATTACTTCAACATTTGCAAAGGATTTTGCAAACAGGGGAATGCTGGCTTATGTGGAAAGGATTCAGAGAGAGGAGAGGAACAATGGGGTTGACACACTTGCTCACCAAAAATGGGCTGGTGCTAATTACTATGACAGGTACCTCAAAACTGTCCAGGGTGGTGTAGCTTCAACTGCTGCAATGGGAAAAGGCAAGTCATACATTCCAAAATTACAATGCTTTATTAAACTTTAG 1683 0.4486 MAASSIFVPSSQIMEEEARFEAEVAEVQAWWNSERFRLTQRPYSARDVVSLRGNLRQTYGSNEMAKKLWRILKTHQANGTASRTFGALDPVQVTQMAKHLDTIYVSGWQCSATHTTSNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREERMNMSREERARTPYVDYLRPIIADGDTGFGGTTATVKLCKLFVERGAAGIHIEDQSSVTKKCGHMAGKVLVAISEHINRLVAARLQFDVMGVETVLVARTDAVAANLIQSNIDTRDHQFIMGVTNPSLKGKSLATLMAQSMAAGKNGAQLQALEDEWLSMAKLKTFSEAVVDGIKNLNIGEEEKRRRLNEWLECSSYEKCLSNEESREIADRLGVRNLFWDWDLPRTREGFYRFKGSVAAAVVRGWAFAPHADLIWMETASPNVVECTQFAEGVRSKYPEMMLGYNLSPSFNWDASGMTDEQMRDFIPRVAQLGYVWQFITVGGLHSNALITSTFAKDFANRGMLAYVERIQREERNNGVDTLAHQKWAGANYYDRYLKTVQGGVASTAAMGKGKSYIPKLQCFIKL. 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05167 560 Gene3D - 264 379 - -
Seca4g05167 560 Pfam Isocitrate lyase family 23 547 IPR006254 GO:0004451|GO:0019752
Seca4g05167 560 CDD ICL_PEPM 68 259 IPR039556 GO:0003824
Seca4g05167 560 PIRSF ICL 14 327 IPR006254 GO:0004451|GO:0019752
Seca4g05167 560 PIRSF ICL 370 550 IPR006254 GO:0004451|GO:0019752
Seca4g05167 560 ProSitePatterns Isocitrate lyase signature. 213 218 IPR018523 GO:0003824
Seca4g05167 560 PANTHER ISOCITRATE LYASE/MALATE SYNTHASE 14 548 IPR006254 GO:0004451|GO:0019752
Seca4g05167 560 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 13 537 IPR015813 GO:0003824
Seca4g05167 560 NCBIfam isocitrate lyase 24 547 IPR006254 GO:0004451|GO:0019752
Seca4g05167 560 Gene3D - 19 537 IPR040442 -
Seca4g05167 560 FunFam Isocitrate lyase 264 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05167 Seca-Chr4 96495458 96498157 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05167 K01637 - gmx:100782793 999.579
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05167 4 96495458 96498157 Seca4g05167 4 96495458 96498157 ECH