Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05161 ATGAAGGTGGTGGTTGAGAATTTGACAGGAACACTTTTCTACATCCAAGTGGGCAATGATGCCACGGTCGAAGATCTAAAAAAGGAAATTGAGGCTCAGCAGAAGCTCCCTTGTGACCGTCTGATCCTCATTCTTGATACTGATAGCAGCCCTCTGATGACCAAAGAGGAAGAAAAGGCATCTCTGATTGATTGTGGAGTCCAAGATGGGTCCCACATATACCTTTTCTTCAACCCTCTTGATGATGACTCTAAGGATCATTTTGTGTTCACTTCGCCTTGA 282 0.4433 MKVVVENLTGTLFYIQVGNDATVEDLKKEIEAQQKLPCDRLILILDTDSSPLMTKEEEKASLIDCGVQDGSHIYLFFNPLDDDSKDHFVFTSP. 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05161 93 ProSiteProfiles Ubiquitin domain profile. 1 75 IPR000626 GO:0005515
Seca4g05161 93 SMART ubq_7 1 78 IPR000626 GO:0005515
Seca4g05161 93 Pfam Ubiquitin family 4 78 IPR000626 GO:0005515
Seca4g05161 93 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Seca4g05161 93 CDD Ubl_ubiquitin_like 3 76 - -
Seca4g05161 93 Gene3D - 1 77 - -
Seca4g05161 93 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05161 Seca-Chr4 96372564 96372845 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05161 - - lja:Lj3g3v2900800.1 172.94