Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05132 ATGGAAGCTTGCTGCAATCTTGAAGTGGATGTAAATGGAGAAGAGACCTTCATGGTGGATAAGACGATTATGACCAAGTACTCAAGCAAATTTGCTAAATTGTTTGGAAAATCTAGTGGTGCCACAGGAAAGCTTAAAGTGATATTCCATGATTTTCCAGGAGGTGCAGAAGGTTTTGAGCTTATGTTAAGATTCTGTTATAACAATGGAACAGCTGATATAAGTCCCTCCAATTTGTTACTCGCACGTTGTGCTGCTGAATACATGGAAATGAACCAATCTGTTGCTGGTGTTTCTAACTTCCTTGAGCAAACAGAAAAATCACTCCAAGAGATTAGCTATTGGACATGGTCAGACCTTTTGATTGCTTTGAAGCAGAGCCAGAATCTACTAATTGAAGATTCTTGTGTGATGTTAGAGAGATGCTTGGATACTGTAGTGGGAAGGCTTGTTTTGGCCAGTGAAGCAAGTCCTTGTCCATCAACTTGTTCCACTGACAGTTCTGGGATTCGGTTTTCATGTGACTCTAAAAGTACTGAAAGTATAAAGACAAATTTCTCTCGCTCAACATGGTGGTTTGAAGATCTCCTGTTTTTGAGTCCCTTGTTGATTGCAATGTTGGTGAAGTCAATGCTTTCGCGTAAGTTAGATCATGTTGTGATCAGCAGGTTTCTTATCTATTATCAGAAGGCAAAATTCTCCACTGCTACTACTGATGAGAAGTGCAAGATCATAGAAATGGTCATAGATATGCATTATAATATGGATCAGAGTTCTGTTTCTTGCAAGACTTTATTTGGGATTCTTCGGGTTACTTTGAGTTTGAACATAAGCAAATGTAGCAAGAATAAGTTGGAGAGTATGATTGGTTCCCACTTGGATCAAGCAACCTTAGACAATTTGCTTATTCCATCTCCCTATGGAATAAGCTACTTATATGATGTAAACCTTGTTATGAGATTTTTGAAAGCATTCCTTCGTAGAGGAACTGGTCTAATCGCTCCCATTAGTATGAGGAAAGTTGCTAGCTTAATAGATTTGTATATAGCAGAAATAGCTCCTGATCCTTGTTTGAAAACTTCAAAGTTCTTGGCTCTTGCTACAGCACTTCCAGATTCTGCGAGAGATTCTTATGATGAGCTCTACCATGCAATGGACATGTATCTTGAGGTAGTACATACTCAATTATCACAAGAAGAAAGGGTGAAGATATGCTGTGGTTTAAATTATGATAAGCTTTCGCCTCAAGCTTGCTTACACCTTTCACAGAACACAAAATTTCCTTCAAAATCAGCAGTGCAGGCTCTCATCTCTCAACAATCTAAGCTAAAAAATTTACTCAACGTTACTCCAAGTTCAACTCCATACAATGATTTCCCATGCAGTTCCAGTGGTGCTACTCAAATGGGAAAGAAAGACAAAACCAGTGAACAGGTTGTGTTGTATGCTGGCAATCTTGATCTTTCAGTTGATAATGAGAAACTCAGAGCACATTTGCAAGGAATGCAGTGGAGGGTTATGGAATTAGAGAAGTTCTGTAGGAAAATGCAAGTCCAGATGACAAAGATCACAAAATCAAAAGCACCAGGCAACAGTAATGCAAAAACAAAATCTCTGCCCAAGCTCTGTTCATGA 1635 0.3884 MEACCNLEVDVNGEETFMVDKTIMTKYSSKFAKLFGKSSGATGKLKVIFHDFPGGAEGFELMLRFCYNNGTADISPSNLLLARCAAEYMEMNQSVAGVSNFLEQTEKSLQEISYWTWSDLLIALKQSQNLLIEDSCVMLERCLDTVVGRLVLASEASPCPSTCSTDSSGIRFSCDSKSTESIKTNFSRSTWWFEDLLFLSPLLIAMLVKSMLSRKLDHVVISRFLIYYQKAKFSTATTDEKCKIIEMVIDMHYNMDQSSVSCKTLFGILRVTLSLNISKCSKNKLESMIGSHLDQATLDNLLIPSPYGISYLYDVNLVMRFLKAFLRRGTGLIAPISMRKVASLIDLYIAEIAPDPCLKTSKFLALATALPDSARDSYDELYHAMDMYLEVVHTQLSQEERVKICCGLNYDKLSPQACLHLSQNTKFPSKSAVQALISQQSKLKNLLNVTPSSTPYNDFPCSSSGATQMGKKDKTSEQVVLYAGNLDLSVDNEKLRAHLQGMQWRVMELEKFCRKMQVQMTKITKSKAPGNSNAKTKSLPKLCS. 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05132 544 SMART BTB_4 5 106 IPR000210 GO:0005515
Seca4g05132 544 ProSiteProfiles BTB domain profile. 5 69 IPR000210 GO:0005515
Seca4g05132 544 Pfam NPH3 family 190 418 IPR027356 -
Seca4g05132 544 ProSiteProfiles NPH3 domain profile. 190 442 IPR027356 -
Seca4g05132 544 Pfam BTB/POZ domain 4 105 IPR000210 GO:0005515
Seca4g05132 544 SUPERFAMILY POZ domain 3 103 IPR011333 -
Seca4g05132 544 Gene3D Potassium Channel Kv1.1; Chain A 1 119 IPR011333 -
Seca4g05132 544 PANTHER OS12G0117600 PROTEIN 7 521 IPR043454 -
Seca4g05132 544 MobiDBLite consensus disorder prediction 523 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05132 Seca-Chr4 95791676 95795692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05132 17 522 EF-hand Containing Proteins AT3G44820 27.709 1.27e-55 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05132 - - gmx:100784792 925.62