Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05119 ATGGCCACTTCTAACAACAATATGCTGTTAAACTATGTTCCAGTTTATGTCATGCTTCCACTCGGAGTTGTTAGTGTTGATAATGTCTTTGAAGACCCAGATGGCCTTAAAGAACAGCTCCTGCAGCTGCGAGCAGCAGGTGTGGATGGGGTTATGGTTGATGTCTGGTGGGGGATCATTGAACAGAAGGGGCCTAAACAGTATGATTGGAGTGCCTATAGGACCTTGTTTCAACTGATTCAGGAATGTGGCTTGAAACTGCAAGCTATCATGTCATTCCATCAATGTGGAGGGAATGTAGGGGATGTTGTCAACATCCCAATTCCTCAATGGGTCCTTGACATTGGAGAATCAGATTCTGATATTTTTTATACCAACCGCTCGGGTACCAGGAATAAGGAATATCTCACTATTGGTGTAGACAATAAGCCTATCTTCCATGGAAGAACAGCCATTGAGGTATACAGTGACTGCATGAAGAGTTTCAGAGAAAACATGTCAGATTTTATAAAATCCGAGCTTATTATAGACATTGAAGTCGGGCTTGGTCCAGCAGGAGAGCTTAGATACCCCTCTTATCCACAAAGTCAAGGATGGGAATTTCCTGGTATTGGAGAATTTCAGTGTTATGACAAATATTTGAAGGCAGATTTCAAAGCAGCTGCTGCAAGGGTTGGCCATTCTGAATGGGAACTGCCAGATGATGCAGGAGAGTATAATGATGTACCAGAATCTACTGAGTCCTTCAAATCAAATGGCACATATCTCACTGAGAAAGGGAAGTTCTTCTTAACTTGGTATTCTAACAAATTGCTGGATCATGGCGATCAAATCCTAGATGAAGCCAACAAAGCTTTCCTGGGCTGTAAAGTCAAGTTAGCCATCAAAGTCTCTGGAATCCACTGGTGGTACAAATCTGAAAATCATGCTGCTGAACTCACTGCTGGATATTACAACCTTGGTGATAGAGATGGATACCGTCCAATTGCAAGAATGCTGACCCGTCATCATGCCATTTTGAACTTTACTTGTCTTGAGATGAGGGACTCAGAACAAAGCTCTGATGCCTACAGTGAACCAGAGGAACTTGTTCAGCAGGTATTGAGTGGAGGTTGGAGAGAACATATCGAAGTTGCTGGAGAGAATGCACTTTCAAGGTATGATGCCACAGCTTATAACCAAATCATACTGAATGCAAGACCACAAGGTGTCAACAAAAATGGCCCTCCAAAACTTTGGATGTATGGAGTAACATACCTTCGTCTATCAGATGATCTAATGGAACAATCAAATTTTGATATATTCAAAAAATTTGTGGTAAAAATGCATGCAGATCAGGATTACTGTGCTGACCCTGAAAAGTACAATCATGCCATACCACCATTGAAGCGATCAGGACCAAAGATTCCCAATGAGGTTCTTCTTGAAGCAGCTAAACCAATACCACCATTCCCTTGGGAATCAGAGACAGACATGAAAATTGATGGCTGA 1491 0.4205 MATSNNNMLLNYVPVYVMLPLGVVSVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIEQKGPKQYDWSAYRTLFQLIQECGLKLQAIMSFHQCGGNVGDVVNIPIPQWVLDIGESDSDIFYTNRSGTRNKEYLTIGVDNKPIFHGRTAIEVYSDCMKSFRENMSDFIKSELIIDIEVGLGPAGELRYPSYPQSQGWEFPGIGEFQCYDKYLKADFKAAAARVGHSEWELPDDAGEYNDVPESTESFKSNGTYLTEKGKFFLTWYSNKLLDHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKSENHAAELTAGYYNLGDRDGYRPIARMLTRHHAILNFTCLEMRDSEQSSDAYSEPEELVQQVLSGGWREHIEVAGENALSRYDATAYNQIILNARPQGVNKNGPPKLWMYGVTYLRLSDDLMEQSNFDIFKKFVVKMHADQDYCADPEKYNHAIPPLKRSGPKIPNEVLLEAAKPIPPFPWESETDMKIDG. 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05119 496 ProSitePatterns Beta-amylase active site 2. 183 193 IPR018238 GO:0000272|GO:0016161
Seca4g05119 496 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 90 111 IPR001554 GO:0000272|GO:0016161
Seca4g05119 496 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 47 61 IPR001554 GO:0000272|GO:0016161
Seca4g05119 496 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 183 205 IPR001554 GO:0000272|GO:0016161
Seca4g05119 496 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 291 307 IPR001554 GO:0000272|GO:0016161
Seca4g05119 496 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 255 274 IPR001554 GO:0000272|GO:0016161
Seca4g05119 496 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 363 385 IPR001554 GO:0000272|GO:0016161
Seca4g05119 496 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 326 349 IPR001554 GO:0000272|GO:0016161
Seca4g05119 496 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 68 86 IPR001554 GO:0000272|GO:0016161
Seca4g05119 496 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 308 319 IPR001554 GO:0000272|GO:0016161
Seca4g05119 496 Pfam Glycosyl hydrolase family 14 16 438 IPR001554 GO:0000272|GO:0016161
Seca4g05119 496 Gene3D Glycosidases 2 496 - -
Seca4g05119 496 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 9 448 IPR001554 GO:0000272|GO:0016161
Seca4g05119 496 FunFam Beta-amylase 4 471 - -
Seca4g05119 496 ProSitePatterns Beta-amylase active site 1. 94 102 IPR018238 GO:0000272|GO:0016161
Seca4g05119 496 SUPERFAMILY (Trans)glycosidases 9 491 IPR017853 -
Seca4g05119 496 PRINTS Plant beta-amylase signature 329 339 IPR001371 GO:0000272|GO:0016161
Seca4g05119 496 PRINTS Plant beta-amylase signature 371 380 IPR001371 GO:0000272|GO:0016161
Seca4g05119 496 PRINTS Plant beta-amylase signature 385 394 IPR001371 GO:0000272|GO:0016161
Seca4g05119 496 PRINTS Plant beta-amylase signature 418 432 IPR001371 GO:0000272|GO:0016161
Seca4g05119 496 PRINTS Plant beta-amylase signature 400 416 IPR001371 GO:0000272|GO:0016161
Seca4g05119 496 PRINTS Plant beta-amylase signature 173 182 IPR001371 GO:0000272|GO:0016161
Seca4g05119 496 PRINTS Plant beta-amylase signature 433 447 IPR001371 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05119 Seca-Chr4 95635568 95643366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05119 2 494 Glycoside Hydrolase AT2G32290 67.409 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05119 K01177 - gmx:547931 915.99