Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05114 ATGGAAACAAGATCTGCAAAACGTAAAAAGATTGCTCAGATAGTAGAAAACGATGCCAAAGATTGGATCAGTGATCTCCCTGATGCTGTTCTTCATCACATTCTTTTTTTACTTCCCATAAAATGCGTTGCACAGATGAGTGTTCTTTCTAAGAGATGGAAATCTCTCTGGACCACTTTCCCTGATCTTGACTTCACAACCCTTAACCCATTTGCACTTTCTTCCAAAAACCTTAAATTTTCAAACTTAGAAAAATTTAAACATCCTCTGGCTTCAACACAAATGGATTTCATCACCCAAGTTCTCTCTATTCGTGACAAGAACTCAGATATTAGGATTCTCTGTTTTCGTGCCCGTTTGAGTTTTTCACGGCTAAATAGTTTGATTCGTAGTGCCATTAGGCACAATGTTAGGGAACTTGATATTGATGTGGACACAGCAGTGGATACAGATGATTACTTCAACTTTCCAAGATGTGTTATTGGGAGTGAATCTTTAAAGGTTTTGAAATTGAAATCAGGTTTTCGTTTGCCTCCATCATCAATTATGAGGACAGGGTTTCAGTCTTTGCAAACCTTGTCACTTTCCTTAGTCATCTTGTACCATCAGCCTTCTCTCTCTGATATGTTCTCTGAATCATCCTTTCCTCTTCTGAGAAATTTGCACCTTGATATGTGCTTTGGATTAAAATATCTCCATGTTGGTTGCCGTGCTCTTGAAGATTTGAGCTTGGAAAAGTGTTTTCAACTACAGGGTATGGATATCTCTAGTGCAAAACTTGAAAGGATGAGAGTAGCAAGTTGTTTTGATGCTTATAATGACAAGAGTTGGGTAAGAATCAATGCACCAAAGCTTCAACATTTGTTTTGGCAATATAATGCAGTCACTGACATTACTATTTTTGAGCATTCAAAATTCTTGCATGAGGCTTCTGTTGGTTTCTTTATACTGAAGGAAGATATAATTAGTATGGGTAAGCTTCAAAGTGCCAATAATTTCTTGTCTGGACTATCTCATGCCCGTTCCTTGACTCTTCAAAGCCAAGCTATTGAGATTCTATCAAACAATAACTTCTTTATTCAGCCATTTTATAATCTTAAGTCATTAGAGCTGCATACTGGTTTCAACAAAAGTAATATTCAGGGATTAGCATGCCTATTCAGGAGCTCTCCTACCCTTCACACACTGATTCTCAAGATCATTAATGATTATAAGATTGAAAGAAAACAGCAATGGAATAGGGACTTGTGGGACATGACTAGCACTGAGGACGAGCAGTATTGGGAATCTCAGATCCCAAGTCTGAAGTCTTTCCTACAACACTTGAAAGTGGTGAAAATTCATGGTTTTCTTGATTGTGAGAATGAAGTTACACTAGCAAAGTTTCTCCTCAAGCACGGAAAGGCTTTAGAAGAAATGATGATATCATGTGCAGGACAATGCAATGCTAGAGATACTCTCAGGCGACAAAAAATAAGGTCACAGATGATGGGCTTTTCTTGGGCTTCTTCTAATGCGAAAGTGGAGTTTCAGTAG 1536 0.3796 METRSAKRKKIAQIVENDAKDWISDLPDAVLHHILFLLPIKCVAQMSVLSKRWKSLWTTFPDLDFTTLNPFALSSKNLKFSNLEKFKHPLASTQMDFITQVLSIRDKNSDIRILCFRARLSFSRLNSLIRSAIRHNVRELDIDVDTAVDTDDYFNFPRCVIGSESLKVLKLKSGFRLPPSSIMRTGFQSLQTLSLSLVILYHQPSLSDMFSESSFPLLRNLHLDMCFGLKYLHVGCRALEDLSLEKCFQLQGMDISSAKLERMRVASCFDAYNDKSWVRINAPKLQHLFWQYNAVTDITIFEHSKFLHEASVGFFILKEDIISMGKLQSANNFLSGLSHARSLTLQSQAIEILSNNNFFIQPFYNLKSLELHTGFNKSNIQGLACLFRSSPTLHTLILKIINDYKIERKQQWNRDLWDMTSTEDEQYWESQIPSLKSFLQHLKVVKIHGFLDCENEVTLAKFLLKHGKALEEMMISCAGQCNARDTLRRQKIRSQMMGFSWASSNAKVEFQ. 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05114 511 CDD F-box_AtFBL13-like 23 58 - -
Seca4g05114 511 Gene3D Ribonuclease Inhibitor 17 313 IPR032675 -
Seca4g05114 511 Pfam FBD 436 475 IPR006566 -
Seca4g05114 511 ProSiteProfiles F-box domain profile. 20 68 IPR001810 GO:0005515
Seca4g05114 511 Pfam F-box domain 23 58 IPR001810 GO:0005515
Seca4g05114 511 SUPERFAMILY RNI-like 125 398 - -
Seca4g05114 511 SUPERFAMILY F-box domain 12 71 IPR036047 GO:0005515
Seca4g05114 511 SMART 9598neu4hmm 436 511 IPR006566 -
Seca4g05114 511 PANTHER F-BOX/RNI SUPERFAMILY PROTEIN-RELATED 22 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05114 Seca-Chr4 95571895 95574222 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05114 8 399 EF-hand Containing Proteins AT5G41840 23.380 2.12e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05114 - - adu:107477862 808.135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05114 4 95571895 95574222 Seca4g05114 4 95571895 95574222 ECH