Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05110 ATGGCTAGCATTGGCAAAGGAATTGACTTTGAAGACTTGCTGCCTGTGATGGCCAACAAGCTTGGTGGGGAGGGTCTGATAAAAGAGCTGTGCAATGGGTTTCAGTTGCTGATGGACAAAGACAAAGGGGTCATCACGTTGGACAGCTTAAGGAGCAACGCTGCTCTTTTGGGTCTTCAAGACTTGAAGGAAGATGAGCTTGTAAGCATGATGAGGGAAGGGGATCTTGATGGAGATGGGGCACTCACTCAGATGGAGTTCTGTGTTTTGATGTTCAGGTTGAGCCCAGAGTTAATGGAAGAGTCATGGTTCTGGCTTGAAGAGGCTCTGCAACATGAATTCAATGACAACTCTTCCATCTAA 363 0.4683 MASIGKGIDFEDLLPVMANKLGGEGLIKELCNGFQLLMDKDKGVITLDSLRSNAALLGLQDLKEDELVSMMREGDLDGDGALTQMEFCVLMFRLSPELMEESWFWLEEALQHEFNDNSSI. 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05110 120 PANTHER CALCIUM-BINDING PROTEIN KIC 8 116 IPR044205 GO:0005509
Seca4g05110 120 Pfam EF-hand domain pair 42 93 IPR002048 GO:0005509
Seca4g05110 120 SMART efh_1 66 94 IPR002048 GO:0005509
Seca4g05110 120 Gene3D - 8 120 - -
Seca4g05110 120 ProSiteProfiles EF-hand calcium-binding domain profile. 62 97 IPR002048 GO:0005509
Seca4g05110 120 SUPERFAMILY EF-hand 7 106 IPR011992 -
Seca4g05110 120 ProSitePatterns EF-hand calcium-binding domain. 75 87 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05110 Seca-Chr4 95491929 95492291 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05110 10 114 EF-hand Containing Proteins AT5G54490 65.094 2.69e-44 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05110 K24345 - gmx:100527206 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05110 4 95491929 95492291 Seca4g05110 4 95491929 95492291 ECH