Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05100 ATGACTTATTTTGACTATGTGCTTCGCTCTTTCAATCAGAAATCAGTTCAACCTTCTACTGAAGCAATGGTGAAGGCTTTGCAAGATGGTTCCAAAAATCACATCTATAAAGATTCATCTAACTCTACGAGCACAATTTCATCAATTTCGAAAGAACAAGCACGTAAGCAAATAAATGTTGTTGAGAATCGTGTTTGCAATTGGGATTCAGTTGAGCGCATTGGTAGGTCTGATGATCTGAATAGCAAATTTTCCATTAAATGTGACACAGAAGTTCACCAAACTGGGCGCCTTAAGAAAAGCCAGTCTCTGGAAAGTGGGCTTTACAAAGGCACAACTGAGGTTGATGAAGATCTGGGGTTTTCCTGTAGTAGCTCCAAAAGCCACTGTGCCAATCCCAGTGATCAGTGTAATAAGAATTCAAGCTTTGAGTTCCAAGTCACTTCAGGTCTTGCCAATGATGGCTCACTTTTTTCAATAGGAGATCCAACTCCTTCAGATAAAGATGCCCATGAAATTTCTGATACTCCATTATCTGGTGAATTAGGTGGTGACTCTGCTGACCGGACATCTGGTCCTTGTACCCCATCTTTAATGAAATCACGTTCTTTACCCAATATCAAAGCTTCTATACTTTCTCCTGGAAAATATGCTTTTAAACATGCATCTTCAATGTCAAGATCTTCTGATGATCTTCATGCTTTAGGCATGAGACAGAAAGAGGTATTCATCAATGAGTCTGATGATCAAATAAGGAAAGATCAAGAAAGTGAGAATAACATGAGAAAAACTGAAGATAGTCATATGGACAGATACTTTGATGATGGTTTTGATTCTTATCTGCATTCTGGTTTAGAAAAAGACTGGGTAATGCCAATTACAGGTGATATAAGTGATGTCAAAACCCTTCAAGGAGATTCCTCAATTGATTGCTTGGATGAGTTTTCTAATAAGGATTTTAAGATTAAGCGCATTGAGGATTGGGTAACAGGTCTGCAGCATTGTGGACCACCTCTAGAGGAAACAAATGAATTTCCTGAATCTGTTGAGCCGCCAGTTGATGTTAACACCGTAAATTGTGTGAGTGTGACTACTCCAGGTATGGATCAAAAGATCACTCCAGGAATGGAAGCGGCTAAAAGATATATATCTTCTTTGAGTGCTAATGCCAATGCGGCTCAGCTGACAAATTATGGGTTGGTTGTGATCCCCTTTTTGAGTGCATTTGTGAGTTTGAAGATGCTCAATTTGTCTGGAAACGCAATTGTGAGGATAACTGCTGGTTCTCTTCCTCGAGGACTTAACACGTTGAATTTGTCAAGAAACAATATCTCCACTATAGAGGGATTACGTGAACTTACGCGGCTTCGTGTCCTAGACCTCAGCTACAATCGTATACTAAGAACCGGACATGGCCTAGCATCTTGTTCATCTCTGAAGGAGCTGTACTTGGCTGGAAACAAGATCGGTGAAGTAGACGGCCTGCACCGCCTCTTGAAACTAAGTATCCTGGATCTCCGATTCAACAAAATTTCAACAGCCAAATGTCTAGGCCAACTTGCAGCCAACTATAATTCATTGCAAGCTATCAACTTGGAAGGGAACCCTTGCCAAAAGAATGTTGGAGATGAACAACTGAAGAAATATTTGCAGGGCCTTCTTCCCCATCTTGTGTACTACAACCGGCAAGCTATGAAAGTGAGCACTTTGAAGGATGGTGCAGACCGTTCTGTTCGGTTAGGAATGAATTCCCAGCAGTTTGATCGCAGCCTCAGAGTGGACCGCAAGGCCACAAGGAAGGGCAGCCATGGTGTTGTAGCTGGTCGTAGGCCATCATCCACTGCCAGTTATGCTCACAGAAGCCAATCTGGGGACTCATTAAAACTTTCCAAAGGCAGACAAGCTCACCTGCCACCAATCAGAACCAAAGCATCAACCCAAACTCGCTATCCTTTTGATGCTCCTAGCAAAGTATTGACATCAGGTCACTCCATGCGCAAGAGTCGCAGTGAGGGAACTCTTGGAGCTCTGTGA 2034 0.4228 MTYFDYVLRSFNQKSVQPSTEAMVKALQDGSKNHIYKDSSNSTSTISSISKEQARKQINVVENRVCNWDSVERIGRSDDLNSKFSIKCDTEVHQTGRLKKSQSLESGLYKGTTEVDEDLGFSCSSSKSHCANPSDQCNKNSSFEFQVTSGLANDGSLFSIGDPTPSDKDAHEISDTPLSGELGGDSADRTSGPCTPSLMKSRSLPNIKASILSPGKYAFKHASSMSRSSDDLHALGMRQKEVFINESDDQIRKDQESENNMRKTEDSHMDRYFDDGFDSYLHSGLEKDWVMPITGDISDVKTLQGDSSIDCLDEFSNKDFKIKRIEDWVTGLQHCGPPLEETNEFPESVEPPVDVNTVNCVSVTTPGMDQKITPGMEAAKRYISSLSANANAAQLTNYGLVVIPFLSAFVSLKMLNLSGNAIVRITAGSLPRGLNTLNLSRNNISTIEGLRELTRLRVLDLSYNRILRTGHGLASCSSLKELYLAGNKIGEVDGLHRLLKLSILDLRFNKISTAKCLGQLAANYNSLQAINLEGNPCQKNVGDEQLKKYLQGLLPHLVYYNRQAMKVSTLKDGADRSVRLGMNSQQFDRSLRVDRKATRKGSHGVVAGRRPSSTASYAHRSQSGDSLKLSKGRQAHLPPIRTKASTQTRYPFDAPSKVLTSGHSMRKSRSEGTLGAL. 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05100 677 MobiDBLite consensus disorder prediction 614 629 - -
Seca4g05100 677 MobiDBLite consensus disorder prediction 243 267 - -
Seca4g05100 677 MobiDBLite consensus disorder prediction 589 677 - -
Seca4g05100 677 MobiDBLite consensus disorder prediction 640 654 - -
Seca4g05100 677 Pfam Leucine rich repeat 411 466 IPR001611 GO:0005515
Seca4g05100 677 SUPERFAMILY Outer arm dynein light chain 1 402 561 - -
Seca4g05100 677 ProSiteProfiles Leucine-rich repeat profile. 478 499 IPR001611 GO:0005515
Seca4g05100 677 Gene3D Ribonuclease Inhibitor 470 569 IPR032675 -
Seca4g05100 677 PANTHER NISCHARIN RELATED 241 636 - -
Seca4g05100 677 MobiDBLite consensus disorder prediction 156 201 - -
Seca4g05100 677 ProSiteProfiles Leucine-rich repeat profile. 433 454 IPR001611 GO:0005515
Seca4g05100 677 FunFam Protein phosphatase 1 regulatory subunit pprA 370 551 - -
Seca4g05100 677 SMART LRR_sd22_2 476 497 - -
Seca4g05100 677 SMART LRR_sd22_2 431 452 - -
Seca4g05100 677 SMART LRR_sd22_2 498 522 - -
Seca4g05100 677 SMART LRR_sd22_2 453 475 - -
Seca4g05100 677 Gene3D Ribonuclease Inhibitor 383 469 IPR032675 -
Seca4g05100 677 Pfam Leucine Rich repeat 475 490 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05100 Seca-Chr4 95352717 95355413 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05100 - - gmx:100790061 923.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05100 4 95352717 95355413 Seca4g05100 4 95352717 95355413 ECH