Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05041 ATGAGGCGAAGAGCTGCGGATTTTCGAAGGCCAGTGCGAAGGAGCGTTCAGGATGTGGCGTGCTGGGCATTGTGTAGCGTAGTGGTTGTTTTCTTTATTTATATTTTCACAGAAGGGAGCAACAACGAGTCGACACCCCATTTCTCCAGCATATCTCATGTTATGCAGAGAACATTCAGGCATGATAGGGTCATAGAAGGCTTTAATATTACCGAAGAGATGTTAAGCCCTAACTCAGTGGCCAGACAACTGAATGATCAGATATCTCTAGCAAAAGCTTTTGTTGTAATTGCCAAAGAAAATAATAATCACCAGTTTGCTTGGGAATTAAGTGCCCAGATCCGCATTGCACAGATTTTCCTCTCAAATGCTGCCACTAGGCGTGCTCCTTTAACTATCAAGGAATCGGAACATGCTATTCATGACATGGCACTATTGCTATATCAGGCCCAGGAGCTTCATTATGACAGTGCAACCGTGATCATGAGACTGAAAGCAAAAATTCAAGCTCTTGAAGAACAGATGAGTTCTGTAAATGAAAAGAGTTCAAAATATGGACAAATAGCTGCTGAAGAAGTCCCAAAGAGCCTATACTGCCTTGGTGTCCGGTTGACCACTACATGGTTCAAAAATCTTAGCTTGCAAAAGAAATTGAATGACAAAAGGCTAGTGGAGATGAAGCTTAAGAACAATGATCTTTACCACTTCTGTGTGTTCTCTGATAACATTGTTGCTACTTCAGTTGTGATCAATTCAACTGCAATAAATTCCAAAAATCCAGATATGGTTGTTTTCCACCTTGTCACTGATGAAATAAATTATGCTACAATGAAGGCTTGGTTTTCTATGAATGACTTCCGAGGGGTGACAGTTGAAGTTCAGAAGTTTGAAGACTTCAGTTGGTTAAATGCTTCATATGTTCCTGTGCTCAAGCAACTTCAAGACTCAGAGATACAGAACTACTACTTTAAAGGCAACAATGATGATGGCAGGACACCTATCAAGTTCCGTAATCCTAAATATCTATCCATGCTTAACCACCTGAGGTTCTATATCCCTGAAGTTTTCCCTGCACTGAAGAAGGTGGTGTTCCTTGATGATGATGTTGTGGTTCAGAAGGATCTTTCTGATCTTTTCTCCATTGATTTGAATGGCAATGTTAATGGAGCTGTTGAGACATGCATGGAGACATTTCATAGATACCACAAATATTTGAATTACTCACATCCTCTTATACGAGCACATTTTGATCCTGATGCTTGTGGATGGGCATTTGGGATGAATGTATTTGATTTGGTTCAATGGAGGAATAGGAATGTAACAGGCATCTACCACTATTGGCAGGAAAAGAATGTAGACAGGACATTGTGGAAACTTGGTACCTTGCCACCTGGGTTGTTGACATTTTATGGGTTAACTGAGCCTTTGGATCCATCATGGCATGTTTTGGGTTTTGGCTACACAAATGTTGATCCTCAGTTGATAGAGAGAGGGGCTGTATTGCACTTCAATGGGAATTCTAAACCGTGGTTGAAGATTGGGATGGAAAAGTACAAGCCCTTGTGGGAAAAATATGTGGATTATTCTCACCCTTTGTTGCAACAATGCAATTTTCATTGA 1620 0.4062 MRRRAADFRRPVRRSVQDVACWALCSVVVVFFIYIFTEGSNNESTPHFSSISHVMQRTFRHDRVIEGFNITEEMLSPNSVARQLNDQISLAKAFVVIAKENNNHQFAWELSAQIRIAQIFLSNAATRRAPLTIKESEHAIHDMALLLYQAQELHYDSATVIMRLKAKIQALEEQMSSVNEKSSKYGQIAAEEVPKSLYCLGVRLTTTWFKNLSLQKKLNDKRLVEMKLKNNDLYHFCVFSDNIVATSVVINSTAINSKNPDMVVFHLVTDEINYATMKAWFSMNDFRGVTVEVQKFEDFSWLNASYVPVLKQLQDSEIQNYYFKGNNDDGRTPIKFRNPKYLSMLNHLRFYIPEVFPALKKVVFLDDDVVVQKDLSDLFSIDLNGNVNGAVETCMETFHRYHKYLNYSHPLIRAHFDPDACGWAFGMNVFDLVQWRNRNVTGIYHYWQEKNVDRTLWKLGTLPPGLLTFYGLTEPLDPSWHVLGFGYTNVDPQLIERGAVLHFNGNSKPWLKIGMEKYKPLWEKYVDYSHPLLQQCNFH. 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05041 539 Pfam Glycosyl transferase family 8 241 513 IPR002495 GO:0016757
Seca4g05041 539 Coils Coil 161 181 - -
Seca4g05041 539 SUPERFAMILY Nucleotide-diphospho-sugar transferases 234 537 IPR029044 -
Seca4g05041 539 CDD GT8_like_1 234 527 - -
Seca4g05041 539 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 72 538 IPR029993 GO:0047262
Seca4g05041 539 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 235 534 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05041 Seca-Chr4 93900308 93903649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05041 1 539 Glycosyltransferase AT2G20810 76.753 0.0 853
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05041 K13648 - gmx:100792018 927.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05041 4 93900308 93903649 Seca4g05041 4 93900308 93903649 ECH
Seca4g05041 4 93900308 93903649 Seca4g05041 4 93900308 93903649 PCT