Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05027 ATGGTGTTAACTTTGCAGAATCTGCCTCCAGTTCCTCTGGTCAATGTGACCTTAGAACCACACCATCAAATGCTGCCAGTGGGTGTTGTTATGTCGGTTATCGATGCTAAGGTCATTGTGGAAGGAGTGGAGAAGCATGACCCTCTTAACGAGGGTTCTATTCTCTGGTTGACTGAAAGCCGAAAACCTCTAGGTTTAATTGATGAAATCTTTGGACCAGTCAAAAACCCTTACTATGTTGTGAGATACAATTCTGAAAATGAAATCCCTGCGGGTATCCATGGGGGAACCTTGATCTCATTTGTTCAAGAATTTGCTGATCATGTGCTTAATAACAAGGATCTTTACAAAAAAGGGTATGATGCATCTGGTGTGAATGATGAGGAGTTGTCTGAGGAAATAGAGTTTTCAGATGATGAGAAAGAGGCTGAATACAAGAAAACACAAAGAATAACAAAGAGAGGTGTAAATGATCAAAAACCTGGCAAGAGAAAAAACAATAGAAAGAAAGTTTCACCAAAAGAGCATGTGGTACCTACCATCCCTGCTGCACCTGCTGCACCAATGCTCGATATTGGACACTCTTCACCTTTTTCAGGCATTGGACAAGGTCTTTTGGGGGGAACTACCCCAGTTCCACAGTTTCCACCCTTAAATGCAGGTCCTAACTTTGCTCCAAATGGAGTTTGGACAAACGGGCCACCACTTCCACAGCAGCCACAGTCTGCCCTGCTTCCTAATGGATTTCCTACGAATGGCATATCATGTTACCCACAAAACACTCAATTTTCTCATCAGTTGCCTGTGCCAGGAATTCCATTTCAACAGCAATTGCATCCCAGTCAGGGATCCCTTTTCACAACTATGCTGCCTGGGGTGCAGCCCAATGTATTTGCACAGCCCATTTATGCACAGGGGCTTGTGGGTCAAAACCAAATGACATTTGGTTTGAGCTCACCCTTCCCACAGATTCAGCCTCCTATCTGTCCGGCACAACAGGGTTTTCCACCTGTTGAAATGCAATCAGAAATAAGCCGTAATTTGCATTCTAGTACTATTTCTGGCGCCCCCCCTCAATTTCAACCAGGTTCTTCTGCTGGTCGTGGGAGAAAAACATTTCATGGTGCTGGTAGGAAAGGGTGGCGACCAGCAAGGTGA 1158 0.4473 MVLTLQNLPPVPLVNVTLEPHHQMLPVGVVMSVIDAKVIVEGVEKHDPLNEGSILWLTESRKPLGLIDEIFGPVKNPYYVVRYNSENEIPAGIHGGTLISFVQEFADHVLNNKDLYKKGYDASGVNDEELSEEIEFSDDEKEAEYKKTQRITKRGVNDQKPGKRKNNRKKVSPKEHVVPTIPAAPAAPMLDIGHSSPFSGIGQGLLGGTTPVPQFPPLNAGPNFAPNGVWTNGPPLPQQPQSALLPNGFPTNGISCYPQNTQFSHQLPVPGIPFQQQLHPSQGSLFTTMLPGVQPNVFAQPIYAQGLVGQNQMTFGLSSPFPQIQPPICPAQQGFPPVEMQSEISRNLHSSTISGAPPQFQPGSSAGRGRKTFHGAGRKGWRPAR. 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05027 385 FunFam H/ACA ribonucleoprotein complex non-core subunit NAF1 2 102 - -
Seca4g05027 385 Gene3D Probable tRNA pseudouridine synthase domain 3 102 IPR038664 -
Seca4g05027 385 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1 5 333 IPR040309 GO:0000493|GO:0003723|GO:0005732|GO:0042254
Seca4g05027 385 SUPERFAMILY Translation proteins 24 87 IPR009000 -
Seca4g05027 385 MobiDBLite consensus disorder prediction 131 176 - -
Seca4g05027 385 MobiDBLite consensus disorder prediction 140 162 - -
Seca4g05027 385 MobiDBLite consensus disorder prediction 350 385 - -
Seca4g05027 385 Pfam Gar1/Naf1 RNA binding region 25 91 IPR007504 GO:0001522|GO:0042254
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05027 Seca-Chr4 93740962 93742985 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05027 K14763 - gmx:102660668 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05027 4 93740962 93742985 Seca4g05027 4 93740962 93742985 ECH