Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g05016 ATGCCTCATCACCTAATGGAAACTGTTCTCAGCTATAACAATGGAAACGGCACCAATGGCAATGGCAACACTGACTATGATATCATTAGCTGGTTTGAAGATGTAACCCAGAACGCAGGTTCTGTTCAGTCTCAGATACTAAGCCATATTCTGAAGCAGAACTATGGAGTGGAATATCTCAAAAAATGGTTGGGGAATTACAATATCCCAGAAATGGAAGCATGTGCATTGGAATCCCTTTTCACTTCTGTGGTTCCCCTTGCTTCACATGCTGATTTTGAGCCATTTATCCAAAGAATTGCTGATGGAGACACTGCTCCTTTACTCACTCAACAACCCATAACCACTCTTTCCTTAAGTTCTGGAACCACAGAAGGAAGACAGAAATTCGTACCCTTTACCAGCCATAGTGCACAAACCACACTTCAAATATTCACTTTATCAGCAGCCTACAGATCAAGGGTTTACCCCATAAGGGAAGGAGGAAAGATTCTTGAATTCATATACAGTAGCAATCGGTTCAAAACAAAAGGAGGTTTAACTGTTGGAACAGCCACAACACACTGCTATGCAAGTGAAGAATTCAAAATCAAACAACACAAAGCAAAGACATTTAGTTGCAGCCCTGAAGAAGTAATCTTTGGTGGAGACTATAAACAAGCCACATACTGCCACCTCCTTCTTGGTCTCTTTTTCTCTGATCAAGTTGAGTTTATCACCTCAGCTTTTGTGTATAGCATGGTGCAAGCTTTCAGCAGCTTTGAGGAACTTTGGAGAGAAATATGCAGTGACATCAGAGATGGAACTCTGAGTTCAAGAATCAAATCACCCAAAATGAGAGGGGCTGTTTTGGACATCATATATCCAAACCCATGTTTGGCTTCAAAATTAGAAGCTACTTGCCAGGAGCTAGAAGGGGTGGATTGGTTTGGTTTAATCCCAAAGGTTTGGCCTAATGCTAAGTACTTGTATGCTATAATGACAGGGTCTATGCAACCATATTTGAAAAAAATTAGACATTATGCAAATGGGTTGGGTTTAGTTAGTGCTGACTATGGTTCAACTGAGAGCTGGATAGGGGTTAATGTGGATCCCAGTTTTGCTCCAGAGAAAGTAACATTTGCGGTAGTGCCCACTTTCTCTTACTTTGAGTTCATACCACTTCACAGACATAAACAAGATAGTAGTTCAGTTGCTGATGATTTCATTGAAGACAAGCCAATTCCACTATCACAGGTTGAAGTTGGACAACAGTACGAAATAGTCCTCACAACTTTCACTGGATTGTACAGGTGTAGGTTAGGAGATGTGGTGGAAGTGGTAAGCTTTCACAATGGGACCCCAAAATTGAACTTTGTTTGCAGAAGAAAGTTAATTTTGACAATAAATATAGACAAGAACACAGAGAAGGACCTTCAACTAGTGGTAGAGAGGGGGTCTCAGATTCTGAATAAGGCAAAAGCTGAGGTTGTTGATTTCACTAGCTATGCAGATCACAAAAACCAACCAGGGCACTATGTAATTTATTGGGAGATCAAAGGAGAGGTAGAGGACAAGGTACTTGACGCTTGTTGCACAGAAATGGACATGTCTTTTGTTGACCATGGCTATGTGGTGTCTAGAAAAACCAATTCAATAGGACCCCTAGAGCTTTGCATTGTGGAGAGAGGGACTTTCAAGAAGATTTTGGACAACTTCATAGCTAATGGGGCTGCATTGAACCAATTCAAGACTCCTAGGTGCACTAACAACCATGTCCTCCTCAAAATTCTTGACACATGCACTGTTAAAAGGTTTCATAGCACAGCTTATAGTTCAACTTAA 1824 0.409 MPHHLMETVLSYNNGNGTNGNGNTDYDIISWFEDVTQNAGSVQSQILSHILKQNYGVEYLKKWLGNYNIPEMEACALESLFTSVVPLASHADFEPFIQRIADGDTAPLLTQQPITTLSLSSGTTEGRQKFVPFTSHSAQTTLQIFTLSAAYRSRVYPIREGGKILEFIYSSNRFKTKGGLTVGTATTHCYASEEFKIKQHKAKTFSCSPEEVIFGGDYKQATYCHLLLGLFFSDQVEFITSAFVYSMVQAFSSFEELWREICSDIRDGTLSSRIKSPKMRGAVLDIIYPNPCLASKLEATCQELEGVDWFGLIPKVWPNAKYLYAIMTGSMQPYLKKIRHYANGLGLVSADYGSTESWIGVNVDPSFAPEKVTFAVVPTFSYFEFIPLHRHKQDSSSVADDFIEDKPIPLSQVEVGQQYEIVLTTFTGLYRCRLGDVVEVVSFHNGTPKLNFVCRRKLILTINIDKNTEKDLQLVVERGSQILNKAKAEVVDFTSYADHKNQPGHYVIYWEIKGEVEDKVLDACCTEMDMSFVDHGYVVSRKTNSIGPLELCIVERGTFKKILDNFIANGAALNQFKTPRCTNNHVLLKILDTCTVKRFHSTAYSST. 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g05016 607 Pfam GH3 auxin-responsive promoter 31 584 IPR004993 -
Seca4g05016 607 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 28 604 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g05016 Seca-Chr4 93543044 93547636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g05016 27 602 EF-hand Containing Proteins AT1G23160 35.364 1.59e-117 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g05016 K14487 - gmx:100792358 1043.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g05016 4 93543044 93547636 Seca4g05016 4 93543044 93547636 ECH
Seca4g05571 4 105064663 105068715 Seca4g05016 4 93543044 93547636 PCT