Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04958 ATGGTGGCTGGAAATGGTTTGTTTTATCCCATTTTTGGTTTTGCATCGATCGTGCTTTTCATTTACATGTCTTTTGGAGATGTAAGGTTCGGTTTTGAGGAAGAACCTGAATTGTCTTTTGTGGGGAGAAATGGGACTCAATTTGTGTTGGATGGGAAAGCTTTCTACATTAATGGTTGGAACTCTTACTGGTTAATGGTCCAATCTGTGGATGATTATACAAGGCCTAGGGTCCGTGAAATGCTGAAAGCTGGGGCCAAGATGGGTCTCACTGTTTGTAGAACATGGGCATTCAATGATGGTGACTACAATGCCCTTCAAACTTCCCCTGGTGTATTCAATGAGCAAACTTTCAAGGCCTTGGACTACGTTATAGCAGAAGCAAGGCAACATGGGATTAGGCTGCTCCTTAGCTTAGTAAATAACTTGCACGCATATGGTGGGAAGACTCAGTATGTCAAATGGGCATGGCAAGAAGGGGTAGGGTTAAGCTCATCTAACGATTCTTTCTTCTATGATCCATCAATCCGTAGTTATTTCAAAAATTATGTCAAGGTATATTGTCTACAGACTATTCTGACAAGGAAGAATACTATTACTGGAATTGAATATAGACATGATCCCATCATTTTTGGTTGGGAATTGATTAATGAACCTCGGTGCATAACTGATCCTTCTGGTGACACTCTCCAAGATTGGATAGAGGAAATGTCGGCTTTTGTCAAATCGATCGACAAGAACCATCTGGTGACTGTTGGGCTTGAAGGTTTTTATGGTCCTAATGACCCGAAAAGGTTGACTGCCAACCCCCCTGAAGAGTGGGCATCTAGACTTGGATCTGATTTCATTAGGAACTCCAAAATCTCAAATATTGACTTCACCTCTGTCCACATCTATCCTGATCATTGGTTTCATAAACAAGAATTTGAAGTCTATATGAAATTTGTCTCCAAGTGGATGCTTTCTCACATTGAAGATGGTGACAATGTATTGAAGAAGCCTGTCTTGTTCTCTGAATATGGATTATCAGACACAATCAAGAACTTCTCGATGTCTGACCGAGAAAAGATGTATAGAACAATTTTAGACATAACCTACAAATCTGCTAAGAAAAACAGGTCTGGAGCAGGTGCTTTAGTTTGGCAATTCTTAGTTGGAGGAATGAATGAGTTTATTGATGATTTTGGGATGGTCCCATGGGATAGGTCATCAGCGTATTCAATATTTATTGAACAATCATGCAGATTAGCCAAGATCAAGGGATTGGCTCAACAGGAAATAAATTTCAAACAATTTTGCTAG 1302 0.3994 MVAGNGLFYPIFGFASIVLFIYMSFGDVRFGFEEEPELSFVGRNGTQFVLDGKAFYINGWNSYWLMVQSVDDYTRPRVREMLKAGAKMGLTVCRTWAFNDGDYNALQTSPGVFNEQTFKALDYVIAEARQHGIRLLLSLVNNLHAYGGKTQYVKWAWQEGVGLSSSNDSFFYDPSIRSYFKNYVKVYCLQTILTRKNTITGIEYRHDPIIFGWELINEPRCITDPSGDTLQDWIEEMSAFVKSIDKNHLVTVGLEGFYGPNDPKRLTANPPEEWASRLGSDFIRNSKISNIDFTSVHIYPDHWFHKQEFEVYMKFVSKWMLSHIEDGDNVLKKPVLFSEYGLSDTIKNFSMSDREKMYRTILDITYKSAKKNRSGAGALVWQFLVGGMNEFIDDFGMVPWDRSSAYSIFIEQSCRLAKIKGLAQQEINFKQFC. 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04958 433 Gene3D Glycosidases 37 420 - -
Seca4g04958 433 PANTHER - 13 425 IPR045053 GO:0004553
Seca4g04958 433 FunFam Mannan endo-1,4-beta-mannosidase 6 37 420 - -
Seca4g04958 433 SUPERFAMILY (Trans)glycosidases 39 408 IPR017853 -
Seca4g04958 433 Pfam Cellulase (glycosyl hydrolase family 5) 73 382 IPR001547 GO:0004553|GO:0071704
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04958 Seca-Chr4 92483727 92488561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04958 3 421 Glycoside Hydrolase AT2G20680 70.406 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04958 K19355 - gmx:100811461 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04958 4 92483727 92488561 Seca4g04958 4 92483727 92488561 ECH