Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04710 ATGATGTTTTTATTTGGAATGGAACTAAATAATTATTTGTCTGTCAGCACCTCTACATCTGTGATTGTTGACAAGAGTTCTGATGGTGATTTTTTACGTATAGATTTCAATATCAGTTTTCCTGCACTCTCATGTGAGTTTGCATCAGTTGATGTGAGTGATGTGCTGGGAACAAACAGACTCAATATAACAAAAACAGTTCGCAAGTTCTCTATTGATTCAAATTTAAGACCCACTGGCACTGAGTTTCATTCAGGAACAGTTGCAAATGCTGTTAAGCATGATGATGGAGTAGATGAAGAATTTGTTGAAGGTTCTTTTTCCTTCACGGCACAGAATTTTGATACATATGTTCGTCAGTTTCCAATTACAGTTGTAAATTTTTATGCACCTTGGTGTGTCTGGTGTCAACGTTTGAAACCTTCATGGGAGAAGGCAGCTAAAATAATAAAAGAGAGATATGATCCAGAAATGGATGGGCGTATTCTTTTGGCTAAGGTAGATTGCACTCAAGATGGTGATTTATGCAGGAGGCATCACATACAAGGGTATCCATCTATTCGCATATTTCGTAAAGGAAGTGATGTCAGAAGTGACCATGGACATCATGAACATGAGTCCTATTATGGAGATCGTGATGCAGAAAGCCTAGTCAAGACAATGGAGAATTTAGTGGCATCTCTCCCAACAGGATCTCAAAATGCAGCTTTGGGGGATAAATCCAATGCAACAGAGAATGCAAAAAGACCAGCACCATCAGCAGGAGGATGTAGAATTGAGGGATATGTGCGTGTGAAAAAGGTTCCAGGAAACTTGATCATCTCAGCTAGATCAGATGCCCATTCCTTTGATGCTTCTCAAATGAACATGTCACATGTCATAAACCATCTTTCTTTTGGAAGGAAAGTGACTCCTAGGGCCATGAGTGATGTGAAGAACTTGATACCTTACATAGGAAGCAGCCATGACAGGCTGAGTGGCCGGTCATTCATCAATACTCGTGATTTAGAAGCAAATGTTACTATAGAGCATTATATTCAGATAGTTAAAACAGAGGTAATAACTAGAAAAGGTTATAAATTAATTGAGGAGTACGAGTACACGGCTCACAGCAGTGTGGCACACAGTGTAGACATTCCTGTTGCAAAGTTTCATCTTGAGCTCTCCCCCATGCAGGTCTTAATAACAGAAAACCAGAAGTCTTTCTCACATTTTATTACAAATGTCTGTGCTATTATTGGGGGTGTTTTCACGGTAGCTGGAATTCTTGACTCGATTTTGCATACCACTGTTAGAATAATGAAAAAAATTGAGCTTGGCAAAAATTTTTGA 1332 0.3896 MMFLFGMELNNYLSVSTSTSVIVDKSSDGDFLRIDFNISFPALSCEFASVDVSDVLGTNRLNITKTVRKFSIDSNLRPTGTEFHSGTVANAVKHDDGVDEEFVEGSFSFTAQNFDTYVRQFPITVVNFYAPWCVWCQRLKPSWEKAAKIIKERYDPEMDGRILLAKVDCTQDGDLCRRHHIQGYPSIRIFRKGSDVRSDHGHHEHESYYGDRDAESLVKTMENLVASLPTGSQNAALGDKSNATENAKRPAPSAGGCRIEGYVRVKKVPGNLIISARSDAHSFDASQMNMSHVINHLSFGRKVTPRAMSDVKNLIPYIGSSHDRLSGRSFINTRDLEANVTIEHYIQIVKTEVITRKGYKLIEEYEYTAHSSVAHSVDIPVAKFHLELSPMQVLITENQKSFSHFITNVCAIIGGVFTVAGILDSILHTTVRIMKKIELGKNF. 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04710 443 Pfam Thioredoxin 108 206 IPR013766 -
Seca4g04710 443 ProSiteProfiles Thioredoxin domain profile. 77 226 IPR013766 -
Seca4g04710 443 MobiDBLite consensus disorder prediction 231 253 - -
Seca4g04710 443 FunFam Protein disulfide-isomerase 5-4 94 250 - -
Seca4g04710 443 Pfam Endoplasmic reticulum vesicle transporter 251 424 IPR012936 -
Seca4g04710 443 Pfam Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) 1 60 IPR039542 -
Seca4g04710 443 SUPERFAMILY Thioredoxin-like 108 224 IPR036249 -
Seca4g04710 443 CDD PDI_a_family 109 221 - -
Seca4g04710 443 ProSitePatterns Thioredoxin family active site. 125 143 IPR017937 -
Seca4g04710 443 Gene3D Glutaredoxin 104 249 - -
Seca4g04710 443 PANTHER ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 1 442 IPR045888 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04710 Seca-Chr4 87609159 87617032 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04710 - - aprc:113860202 825.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04710 4 87609159 87617032 Seca4g04710 4 87609159 87617032 ECH