Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04703 ATGTGGAGAGATCCTGGAGCTCCTGCTGATTCTTTCTATGAAACCCGCCCTGAGTGCACCGATGTGCCCAAGTCTCGATTTAGGATCAAGGCTGGTAAAACATTAAGTGCAAGAAAATGGCACGCTGCATTTTCTCCAGAAGGGAATCTGGATATAGGAAAGACTCTAAGCCGAATCCACCGTGGGGGAATCCATCCATCAATTAGAGGAGAAGTTTGGGAATTTCTACTTGGCTGCTATGATCCTAAGAGTACATTTGAGGAAAGAGATGAGATAAGGCAACGCCGAAGGCTGCAATATGCTGCATGGAAGGAAGAATGCCGCGAATTGTTTCCTCTTGTTGGAAGTGGTAGATTTATCACAGCACCTGTAATTACTGAAAATGGTCAACCAATTCAAGATCCATTGGTTCTATTAGAAAATAATCCAGACGGTGGGGCGATAGCTCCTCCTCAAGATAGTACCAATGCACTTTTAAGCGCTGCTGCTGCAAATAACGTAGAGATGGTGACAGATAAAGCAGTAATCCAATGGATGTTAACTCTACATCAAATAGGTCTTGACGTGATTCGCACTGATAGGACATTGGTTTTTTATGAGAAGAAAGAGAATTTGTCAAAATTATGGGATATCCTTGCTGTTTATGCTCGGTTAGATGTAGATGTTGGCTATTGTCAAGGAATGAGTGACCTATGTTCTCCTATGATAATACTTCTTAATGATGAAGCTGATGCGTTTTGGTGCTTTGAGCGTCTCATGCGTAGACTGCGAGGAAATTTCAGATGCACCGATGGCTCCGTTGGGGTGGAGGCTCAACTAAGTAATTTGGCTTCAATTACTCAAATAATTGATCCAAAACTTCATCAACATATAGAGCATCTTGGTGGAGGTGACTATTTGTTCGCTTTTCGGATGCTAATGGTTTTGTTTCGACGAGAATTCTCCTTTTGTGATTCATTGTACCTTTGGGAGATGATGTGGGCTTTAGAATATGATCCAGACTTGTTCTGGATGTATGAAGACGCTGACGAAACTTCTGAAAAATCTGAGGAATCTAAAGGAAGATTAAAGTCAATACGTCATTATGGAAAGTTCGAGAGAGAAAATATGAAAAATGGAGCAAAGAATTCTGAAACCCCTCCTCTTCCTATATCAATTTTCCTTGTTGCTAGTGTTTTGAAAGAAAAAAGTGCAACACTACTACAGCAAGCGCGAGGCCTGGATGATGTTGTCAAGATATTGAATGACGTAAATGGAAATCTAGATGCCAAAAAGGCTTGCATTGCGGCACTGAAACTTCACAAGAAATATTTGAAAAAGTTGCAGGCGACAAAGAAAGCCTAG 1344 0.4115 MWRDPGAPADSFYETRPECTDVPKSRFRIKAGKTLSARKWHAAFSPEGNLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYDPKSTFEERDEIRQRRRLQYAAWKEECRELFPLVGSGRFITAPVITENGQPIQDPLVLLENNPDGGAIAPPQDSTNALLSAAAANNVEMVTDKAVIQWMLTLHQIGLDVIRTDRTLVFYEKKENLSKLWDILAVYARLDVDVGYCQGMSDLCSPMIILLNDEADAFWCFERLMRRLRGNFRCTDGSVGVEAQLSNLASITQIIDPKLHQHIEHLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPDLFWMYEDADETSEKSEESKGRLKSIRHYGKFERENMKNGAKNSETPPLPISIFLVASVLKEKSATLLQQARGLDDVVKILNDVNGNLDAKKACIAALKLHKKYLKKLQATKKA. 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04703 447 Gene3D - 266 446 - -
Seca4g04703 447 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 162 260 - -
Seca4g04703 447 Pfam Rab-GTPase-TBC domain 174 328 IPR000195 -
Seca4g04703 447 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 35 415 - -
Seca4g04703 447 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 40 290 IPR035969 -
Seca4g04703 447 SMART tbc_4 60 353 IPR000195 -
Seca4g04703 447 FunFam TBC1 domain family member 15-like 162 260 - -
Seca4g04703 447 ProSiteProfiles TBC/rab GAP domain profile. 63 330 IPR000195 -
Seca4g04703 447 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 268 437 IPR035969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04703 Seca-Chr4 87535484 87542862 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04703 - - gmx:100782079 771.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04703 4 87535484 87542862 Seca4g04703 4 87535484 87542862 ECH