Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04697 ATGGCTCCTGTTGCTCCTCGATCTGGCGATGCAATATTTGCTAACATTGAACGTGTTAATGCGGAGCTGTTTACTTTGACATATGGGGCAATTGTGCGTCAATTGCTCACAGATCTGGAAGAGGTTGAGGAGGTTAACAAGCAGCTAGATCAAATGGGTTATAATATTGGAATCCGTTTGATTGATGAGTTTTTAGCTAAATCTAATGTCTCGAGGTGCGTTGATTTCAGAGAGACTACTGATGTGATTGCAAAGGTTGGTTTTAAAATGTTCCTTGGTGTTACTGCATCTGTGACCAATTGGGATGCTGAAGGGACATGTTGTAGTATTGTTTTGGAGGATAATCCTTTGGTAGACTTTGTTGAGCTTCCTGACACCTGTCAAGGTCTGTACTACTGCAACATCTTAAGTGGAGTCATTAGAGGAGCCTTAGATATGGTGTCAATGAAGACTGAGGTCACTTGGATACGTGATGTGCTTCGAGGTGATGATGTGTTTGAGTTGCAGGTAAAACTTCTCAAGCAAGTTCCAGAAGAGTATCCATACAAGGATGATGAGTGA 561 0.4189 MAPVAPRSGDAIFANIERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVSRCVDFRETTDVIAKVGFKMFLGVTASVTNWDAEGTCCSIVLEDNPLVDFVELPDTCQGLYYCNILSGVIRGALDMVSMKTEVTWIRDVLRGDDVFELQVKLLKQVPEEYPYKDDE. 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04697 186 PIRSF TRAPP_1_Bet3 3 185 IPR016721 GO:0030008|GO:0048193
Seca4g04697 186 PANTHER TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3 7 185 IPR016721 GO:0030008|GO:0048193
Seca4g04697 186 FunFam Trafficking protein particle complex subunit 4 185 - -
Seca4g04697 186 SUPERFAMILY Ligand-binding domain in the NO signalling and Golgi transport 18 176 IPR024096 -
Seca4g04697 186 Pfam Transport protein particle (TRAPP) component 24 171 IPR007194 -
Seca4g04697 186 CDD TRAPPC3_bet3 20 174 IPR016721 GO:0030008|GO:0048193
Seca4g04697 186 Gene3D Trafficking protein particle complex subunit 3 3 185 - -
Seca4g04697 186 Coils Coil 32 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04697 Seca-Chr4 87436063 87444475 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04697 K20302 - zju:107432396 363.229