Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04693 ATGCGCGCCCCTACCGCCAGAAAACTATGCACTCTCAGCTCCTTTGTCCGTTCACACTTACACCGCAAACCAAAAAGAAAAAGCGTTCCCTCTTGCAATACATCATCTTCTCCTGAACCCCAACAAGATTTCGGTTCTGACTTGCACCTTTCAACCCTCGACCTTGATCCTGCCTCTCCCCCAGAGGATTCGCCTGATGCAGATGCTGTCACTACTAAGCTTTCTTCTATATTGTACTCTCCTCCAGTAAAGAGGCTTGTTTCTGAGGAAACTGATAGTGAAGAAAAAGGGAAAAGAATAGTAGATATACCATGGATACCAGACCTTCCTCATGGTGTAATATATCTTAAACGGAAGGAAGTATCTCGTGAGAGGAAACAAAAATGGATTTTTAAATACACAAATGTAGACCGTTTTGATAGGTTACTTAAATTATGTGAAAGAAAACTAGGAGCAGGAGCTACCATTAATGTGTTTCGCCACTTGGGTAGAGAAACAGGTCTGAAAGAGTACAATTCATTGATAAAATTGTGTGTAAACAAGGCTAGGGCAACAGATGATGAAAACATTGCTATAGAAGAAATGAGTAAGGCTTTTCACCTTTTCAAATTAATGAGGCAATGTGGTTTTCCGCTAGAAGAGCAAACATATCACCCTCTTCTTCAGTATTTAATTGACATGGGCATGGTTCAAGAATTTCAACTTTTCTCTGATGTTATCAAAGATGAGAATCCCAGTTCAACTTCACGTTTGGGTTACTATGAAATGATGCTGTGGATAAGAGTTAACAATGAAGAAATGATCCGGGATATTTGTGAATATATTACAGTTGAAGATAGTATGGACACTTCTGCTTTACGAGAAAGTTACTTATTGGCTCTTTGTGAAAGTGATCGGAAGACACAGATTTTGGATGTGCTGAAAAATATAGACATTACAAAGCTTATGTCTACAAGATCTATATCAAATATATTCCAATCATTAGGAAGGCTACAGCTGGAATCTGATGCAGAGAGTTTACTTTTGGATTTGAGAGCACGCGATAATGATGCAGATGATATTTCAAACTTCATTTCTAGTTATGCTGTTAGCATTCCAAATTTAGCGGTTGAGGATATCATCTTAAAAATCAAGAATTTGCATGAGGTATTGGAAGTTTTGCCTTCATCCTCATCATATGAAAAGGTCATTCGTTATTGCTGTGGCTTACACAAGCTGGATGTAGCTCTTGATATTGTTGATAAAATGTGTGAAGCAGGATTTACATTGTCTACTGAGGTGTTACAATCCATATTACAAAAGTGTGAGGAAACTTATGATTATATTTTGGTCCATCGAATCTATTCCATCATATGTTGCCACCATTTGGAGTTGAATGGTGAAATATGCAGGTGTTTGGTACACTTTTGTGTAAGGATTAAAGATTTTGAAGGTGCATACAAGATGGTTGATGACTTGCAGAAAATGAATTTCAAACCTACGACAGCCATGTACAATGCTATAATGGCAGGATATTTTCGGGAGAAAAACATCAGTGGTGGGTTGAGGGTCCTCAAACACATGCAAGATGCCAATGTAAAACCTGATTCACAGACTTTCAGCTATTTGATTAACAATTGTGAAAAGGAAGAGGATATAGTCAAGTATTATGAAGAAATGAAGCAATCTAGAATCCAAGCTACAAAGCAAGTTTTTACGGCCCTTATTAATTCATATGCAGCTTGTGGCCAATTGGAGAAGGCAAAACAGGTACTTTTAGATCCATGCATACCACTCAAGAATTTGAATGAAATTAAGAGTGTCCTTGTCTCAGCTCTTGCATCACACGGGCAATTGTCTGAGGCAATTTCTGTATATAAGGAGATCAAGAAAGCAGGACACAATTTGGAGCCAAAAGCTACTATATGTCTCATTGAGGAGTTGGGTCAATTAAACGGAGAGTTGGATGGGTTGCTTCTTCTCCTTAACGAATTGAGTGATCAAGAGTACTGGGTTGAAGGTTGCTTTAGGGTTATCAAGTATTGTGTTGAGAAAAATCATTTAAGTTCGGCTATTGATTTGTTCAAGCAACTCAAGGATAAGTTCAAAAGTAATGACATAGTAATGGAAGCTCTATTTGACACAGTATTTTCTCTAATTGCAGCATCCAAGTCCACACATTTACAGTTTGGTCTGGACTTGCTTTGGGCAATTAAGGATGAGCTTGGCCTTATTCCTTCACGGCAGTGTCTTGATTTTCTTCTAAGTGCTTGTGCCAATGCTGGAGATTTGAATAATGCTCGTTTGATATGGAGAGAATATGAGGTTGCTGGGTTTCCCTATAATGTATTGAGTTACTTGAGGATGTATCAGGCACTTTTGGCATCAGGAGATCATAGATCTGCTGATTTAATGCTCAAGAAAATCCCAAAAGATGATAATGAGATATGTTCTGTCATCTTAGCTTGTCAAGAAACTTACTCTGGTAATCTTGATTCTGTAGGAGGGAAGAAGAAAAAGAAAGGAAAGAAAAAGAAAAACAAACGGAGAATTGAGTGA 2538 0.3798 MRAPTARKLCTLSSFVRSHLHRKPKRKSVPSCNTSSSPEPQQDFGSDLHLSTLDLDPASPPEDSPDADAVTTKLSSILYSPPVKRLVSEETDSEEKGKRIVDIPWIPDLPHGVIYLKRKEVSRERKQKWIFKYTNVDRFDRLLKLCERKLGAGATINVFRHLGRETGLKEYNSLIKLCVNKARATDDENIAIEEMSKAFHLFKLMRQCGFPLEEQTYHPLLQYLIDMGMVQEFQLFSDVIKDENPSSTSRLGYYEMMLWIRVNNEEMIRDICEYITVEDSMDTSALRESYLLALCESDRKTQILDVLKNIDITKLMSTRSISNIFQSLGRLQLESDAESLLLDLRARDNDADDISNFISSYAVSIPNLAVEDIILKIKNLHEVLEVLPSSSSYEKVIRYCCGLHKLDVALDIVDKMCEAGFTLSTEVLQSILQKCEETYDYILVHRIYSIICCHHLELNGEICRCLVHFCVRIKDFEGAYKMVDDLQKMNFKPTTAMYNAIMAGYFREKNISGGLRVLKHMQDANVKPDSQTFSYLINNCEKEEDIVKYYEEMKQSRIQATKQVFTALINSYAACGQLEKAKQVLLDPCIPLKNLNEIKSVLVSALASHGQLSEAISVYKEIKKAGHNLEPKATICLIEELGQLNGELDGLLLLLNELSDQEYWVEGCFRVIKYCVEKNHLSSAIDLFKQLKDKFKSNDIVMEALFDTVFSLIAASKSTHLQFGLDLLWAIKDELGLIPSRQCLDFLLSACANAGDLNNARLIWREYEVAGFPYNVLSYLRMYQALLASGDHRSADLMLKKIPKDDNEICSVILACQETYSGNLDSVGGKKKKKGKKKKNKRRIE. 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04693 845 MobiDBLite consensus disorder prediction 21 69 - -
Seca4g04693 845 MobiDBLite consensus disorder prediction 29 48 - -
Seca4g04693 845 Gene3D Tetratricopeptide repeat domain 137 444 IPR011990 GO:0005515
Seca4g04693 845 NCBIfam pentatricopeptide repeat 392 424 IPR002885 -
Seca4g04693 845 NCBIfam pentatricopeptide repeat 462 494 IPR002885 -
Seca4g04693 845 NCBIfam pentatricopeptide repeat 497 530 IPR002885 -
Seca4g04693 845 Coils Coil 641 661 - -
Seca4g04693 845 Gene3D Tetratricopeptide repeat domain 445 544 IPR011990 GO:0005515
Seca4g04693 845 Gene3D Tetratricopeptide repeat domain 669 844 IPR011990 GO:0005515
Seca4g04693 845 Gene3D Tetratricopeptide repeat domain 545 668 IPR011990 GO:0005515
Seca4g04693 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
Seca4g04693 845 MobiDBLite consensus disorder prediction 825 845 - -
Seca4g04693 845 Pfam Pentacotripeptide-repeat region of PRORP 391 558 IPR033443 -
Seca4g04693 845 Pfam PPR repeat 564 585 IPR002885 -
Seca4g04693 845 Pfam PPR repeat 601 626 IPR002885 -
Seca4g04693 845 PANTHER OS02G0132600 PROTEIN 6 840 - -
Seca4g04693 845 MobiDBLite consensus disorder prediction 830 845 - -
Seca4g04693 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 494 528 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04693 Seca-Chr4 87378019 87393105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04693 328 691 Glycosyltransferase AT1G05670 21.867 2.61e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04693 - - cam:101502375 1243.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04693 4 87378019 87393105 Seca4g04693 4 87378019 87393105 ECH