Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04688 ATGCAAATGGTACCGAGTCCAATCATATCAAAGAGACCAGAAGACAAGTTTGCAGACAGGCGTCCACTGTTGGCAGTTTGTACGAATGGTTTCTTTGCTGGTAGAAGCAATGTTCAAGATGGGTTGACCGCCCCGTGTAATGGGGGCACTCTAAACTGCCATGACCAAGTGAATGGAAACTGTCTGCCAACTACTGTTCAGTTTTATTCTATGAGCTCCCAATCATACATTCATGTATTAAAGTTTAGATCAACTGTTTTTTCTGTAAGGTGCAGTTCTAGGATAGTTGCTGTTTCTCTAACCACTCAGATACACTGTTTTGATGTCACAACTTTGGAAAGAGAATATACTTTACTTACCAATCCTATAGTAATGAATTTTCCTGGTTCTGGGGCCATTGGCTATGGACCACTTGCGGTGGGTCCTAGATGGCTTGCTTATAGTGGAAGCCCAGTTGCAGTTGCCACTTCTGGGCGTGTCAATCCACAGCATTTGACACCTTCTGCAAGCTTTCCTGGTTTTTCTTCAAATGGGAGCTTGGTTGTACACTATGCCAAAGAGTCTAGTATGCATCTTGCTGCTGGAATTGTGACCCTTGGAGATATGGGGTATAGGAAACTTTCCAGATACTGCTCAGAGCTTCTCCCTGATGGCATTGGTTCTTTACAGTCTGTAAATTCTTGCTCGAAGGGAAATGGAATTGTTAATGGCCATTCAACAGATGTGGATCATGTTGGAATGGTCATTGTGAGAGATATAGTCAGTAAAAATGTTATTGCCCAATTCCGGGCCCACGAGAGTCCTATTTCAGCTTTATGCTTTGATCCTAATGGCACCCTATTAGTGACTGCTTCTGTTCAGGGGCATAACATTAATGTTTTTAAGATATTGCCTGGATATGAGAGTTTGTCAGCATCTGATGCTGGCCCTTCTTATGTTCATCTCTACAAGCTGCAACGTGGCTTTACAAATGCGGTTATACAAGATATCAGTTTTAGTTTTGATAGCAAGTGGATTGTGATTAGTTCCTCAAGAGGCACTAGTCATCTATTTTCTATAAATCCTCAAGGAGGATCTGTAAATATTCAGTCATATGATAATAGTTTTACTGGGAAAAATGGTGGATTAGTTGTTATGACTAATCAAGCTGTTCACTGGCCTCAGAGTTCTGCCTTAGAAATTTCTAAACAGCACAACCTCTGTGCTGCTGGCCCCCCAATCATACTTTCTGTTGTAAGCAGAATTAGGAATGGATCTAATGGCTGGAGAGGAACTGTAACTGGTGCTGCTGCAGCTGCCACAGGTAGGATGAGTTCCCTTTCTGGGGCTATTGCTTCAGCTTTCTGTAACTTCAAAGGCAGCAGTGGCTTGTGTGTTGACGGGAACTATTCCCAGGAAAAGTACAATCTATTGGTCTTTTCACCCACTGGTTCTATGATACAATATGCTCTGCAGACATTAAACAGTCAAGATTCAACTGTTGTTTCTGGATTAATGCATGCTTATGAATCCACTCCCCAGACTGATGCAAGGGTAGTAGTTGAGGCTATCCAGAAATGGAATATAAGTTGGAGACGTAGTCGGAGAGAGCGAGAAGATAATATTGACATATATGGAGAGAATGGAATTTCAGACAGCACTAAAGTATATCCAGGGGAATTGAAGAAGGATAGTATCATTAGCCCTAAAATCAAGAATGTAGCCATGAAATCAAATTCCGGCCCTGGGAAAGAGCATCATCTGTATATTTCAGAAGCAGAACTGCAAATGCATCAAGCTAAGACTCCATTGTGGGCAAAGACCGAGATATATTTTCATTCAATGGGTAAAGAGGCTACTATGATGATGGACGAAGAAGTTGCTTCTAGAGGGGAAATTGAGATTGAAAAGATTCCAACTCACATGATAGAAGCTACATCAAAAGACTTGGTTCCAATATTTGACTATATTCAGACCCCGAAATTTCAACAAATGAGGACTCCTGCTATGGATAACAAGATAAATGAACAACTGTTGCATCAATGCTCCAAGTTGTCTGAAAAGTGCAGAATTTCACCCAGGAGTATTTTAGGATCTCCTGAGCGTATGACTAATTCTGATGGTCCAGTTGCTGAATTTAAAACTGGGATTGAAGGAAATGAGTGGGATGATCATCTGATTCTAGCAGAAACAAAGGGTTTTGTAAATAACAGTGACACCCTTAAACCAAATACTAGGAATGAGATTGTAAATAATAGAAGAGAGCTCTTAAACATGGAGGCTCAAGGCATGTATGTAGATAGTAATAGAGAGGGCCTGAAAATAGAGAATCACTTAGGAGGAAAAGGAGATGAATTTCATTAA 2343 0.4089 MQMVPSPIISKRPEDKFADRRPLLAVCTNGFFAGRSNVQDGLTAPCNGGTLNCHDQVNGNCLPTTVQFYSMSSQSYIHVLKFRSTVFSVRCSSRIVAVSLTTQIHCFDVTTLEREYTLLTNPIVMNFPGSGAIGYGPLAVGPRWLAYSGSPVAVATSGRVNPQHLTPSASFPGFSSNGSLVVHYAKESSMHLAAGIVTLGDMGYRKLSRYCSELLPDGIGSLQSVNSCSKGNGIVNGHSTDVDHVGMVIVRDIVSKNVIAQFRAHESPISALCFDPNGTLLVTASVQGHNINVFKILPGYESLSASDAGPSYVHLYKLQRGFTNAVIQDISFSFDSKWIVISSSRGTSHLFSINPQGGSVNIQSYDNSFTGKNGGLVVMTNQAVHWPQSSALEISKQHNLCAAGPPIILSVVSRIRNGSNGWRGTVTGAAAAATGRMSSLSGAIASAFCNFKGSSGLCVDGNYSQEKYNLLVFSPTGSMIQYALQTLNSQDSTVVSGLMHAYESTPQTDARVVVEAIQKWNISWRRSRREREDNIDIYGENGISDSTKVYPGELKKDSIISPKIKNVAMKSNSGPGKEHHLYISEAELQMHQAKTPLWAKTEIYFHSMGKEATMMMDEEVASRGEIEIEKIPTHMIEATSKDLVPIFDYIQTPKFQQMRTPAMDNKINEQLLHQCSKLSEKCRISPRSILGSPERMTNSDGPVAEFKTGIEGNEWDDHLILAETKGFVNNSDTLKPNTRNEIVNNRRELLNMEAQGMYVDSNREGLKIENHLGGKGDEFH. 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04688 780 FunFam Breast carcinoma-amplified sequence 3 174 404 - -
Seca4g04688 780 Gene3D - 209 402 IPR015943 GO:0005515
Seca4g04688 780 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 1 682 IPR045142 GO:0006914
Seca4g04688 780 Pfam WD domain, G-beta repeat 259 288 IPR001680 GO:0005515
Seca4g04688 780 Pfam Breast carcinoma amplified sequence 3 404 645 IPR022175 -
Seca4g04688 780 SUPERFAMILY WD40 repeat-like 64 354 IPR036322 GO:0005515
Seca4g04688 780 SMART WD40_4 73 108 IPR001680 GO:0005515
Seca4g04688 780 SMART WD40_4 311 352 IPR001680 GO:0005515
Seca4g04688 780 SMART WD40_4 255 295 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04688 Seca-Chr4 87207317 87214966 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04688 - - gmx:100778343 1147.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04688 4 87207317 87214966 Seca4g04688 4 87207317 87214966 ECH
Seca4g04688 4 87207317 87214966 Seca4g04688 4 87207317 87214966 PCT