Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04687 ATGCAGCTGCAGATATCACCAAGTTTGAGGCATGTCACTGTACTTCCGGGAAAAGGGTTGAAGGAATTTATCAAAGTGAGGATTGCATCAAGGAGGCTTTCTTATCGGATGCTCTTCTATTCACTCTTGTTCTTCACTTTTCTTCTCCGGTTTGTGTTTGTCATGACAGCAGTGGATAGCATTGATAGTGAAAACAAGTGCTCTACCATAGGTTGCCTGGGAATAAAACTGAGTCCAAAGTTTTTGGGAAGAAGTCTTGAATCAACTGTTCCAGAAGTGATGTACAGTATATTAGATCAACCCCTTGGCAAAGATGAACTAGAGGGAAGATCTGATATTCCTCAGACTTTAGAGGAGTTCATGACTGACATAAAGAAAGATGAATATGATGCCAAGACATTTGCAATTAAACTACGAGAAATGGTAACCCTTATGGAACAAAGGACAAGGACAGCAAAAATCCAAGAATATTTATATCGTCATGTAGCATCAAGCAGCATACCAAAACAGCTTCACTGCCTTGACTTGAAGCTGGCCAATGAGCATGCTAACAATGCAGCAGCACGGTTTCAGCTACCCTCTGCAGAACTTGTCCCTGCCTTGGTTGACAACTCCTACTTCCACTTTGTTCTTGCCTCAGACAATGTGCTGGCCGCCTCTGTGGTTGCAAAATCACTTGTTCAAAACAGTTTGCGACCTCAGAAAGTTGTGCTGCACATAATTACAGATAGAAAGACTTGTTATCCCATGCAGGCTTGGTTTTCATTGCACCCTTTATCACCTGCAATAATTGAGGTCAAGGCATTGCACCATTTTGATTGGTTTACAAAGGGAAAAGTTCCAGTGCTGGAGGCAATGGAAAAAGATCAACATGTGAGATCACAGTTCAGAGGGGGTTCATCAGCTATTGTTGCCAATACTACTGAGAAGCCAAATGTTATTGCAGCAAAGCTGCAAGCACTTAGTCCCAAGTATAATTCAGTGATGAATCACATTAGGATACATCTTCCAGAGATGTTCTCAAGTCTTAACAAGGTGGTCTTCCTCGATGATGACATTGTGGTGCAAACTGATCTTTCTCCTCTGTGGGACATTGACATGAATGGAAAAGTCAATGGAGCAGTAGAAACATGCACTGGAGAAGACAAGTTTGTGATGTCAAAGAGGTTGAAAAGCTATTTGAACTTCTCTCACCCTCTAATATCCAAAAATTTCGATCCCAATGAATGTGCTTGGGCTTATGGCATGAACATTTTTGACCTGGAGGCTTGGAGGAAGACCAATATAAGCTCTACATACCATTACTGGGTTGATCAGAATATAAAATCAGACCTCAGTTTGTGGCAGCTAGGGACATTACCTCCTGGATTAATAGCATTCCATGGTCATGTTCACTCTATTGATCCTTTTTGGCACATGCTGGGATTGGGATATCAGGAAAATACAAGTTTTGCTGATGCTGAGAGTGCCGGGGTCATTCATTTCAATGGCAGGGCAAAGCCATGGCTAGATATAGCTTTTCCACAACTAAAGCCACTGTGGACCAAGTATATTGACTTTTCAGATCACTTTATTAAGAGCTGTCACATTAGAGCATCATAG 1602 0.417 MQLQISPSLRHVTVLPGKGLKEFIKVRIASRRLSYRMLFYSLLFFTFLLRFVFVMTAVDSIDSENKCSTIGCLGIKLSPKFLGRSLESTVPEVMYSILDQPLGKDELEGRSDIPQTLEEFMTDIKKDEYDAKTFAIKLREMVTLMEQRTRTAKIQEYLYRHVASSSIPKQLHCLDLKLANEHANNAAARFQLPSAELVPALVDNSYFHFVLASDNVLAASVVAKSLVQNSLRPQKVVLHIITDRKTCYPMQAWFSLHPLSPAIIEVKALHHFDWFTKGKVPVLEAMEKDQHVRSQFRGGSSAIVANTTEKPNVIAAKLQALSPKYNSVMNHIRIHLPEMFSSLNKVVFLDDDIVVQTDLSPLWDIDMNGKVNGAVETCTGEDKFVMSKRLKSYLNFSHPLISKNFDPNECAWAYGMNIFDLEAWRKTNISSTYHYWVDQNIKSDLSLWQLGTLPPGLIAFHGHVHSIDPFWHMLGLGYQENTSFADAESAGVIHFNGRAKPWLDIAFPQLKPLWTKYIDFSDHFIKSCHIRAS. 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04687 533 CDD GT8_like_1 207 519 - -
Seca4g04687 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 208 530 IPR029044 -
Seca4g04687 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 209 526 IPR029044 -
Seca4g04687 533 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 98 530 IPR029993 GO:0047262
Seca4g04687 533 Pfam Glycosyl transferase family 8 210 506 IPR002495 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04687 Seca-Chr4 87197763 87201571 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04687 1 533 Glycosyltransferase AT5G54690 80.187 0.0 885
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04687 K20867 - gmx:100777811 964.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04687 4 87197763 87201571 Seca4g04687 4 87197763 87201571 ECH
Seca4g04687 4 87197763 87201571 Seca4g04687 4 87197763 87201571 PCT