LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g04576	ATGGCAGAAACCCTAAGCCCCAATGCCGCGGTGGGTCAGAAGCAGAGGCTCCGCATCCAATCTCCTACCAGCCCCTTCTTCTTGGGCTCCAACGACGACCAGCTCGAACGCGCCCAGGCACGCGCAGCACGCGCCGCCGCCATCCGCCGCAAGAGCCTCGCTGTCTCCCAATCTCTACAAGCCAATTCCGATCCCTGTCTCAACAAGCAGCAGATCCTCGATTTGTTCCATAACTGCATAAAGCTTGCCAGCGAAAACAAAATTAATCAGAAAAACACCTGGGAGTTGAACTTGATTGACCACCTCACTGATATTATTAAGGTCGAAGAAGAAGATGACGCGGAGACTAATTTTCAGAAGGCAAGCTGCACTCTTGAGGCTGGAGTGAAAATATATTCAATGAGAGTGGATTCAGTGCATTCTGAGGCATATAAAGTCCTTGGTGGGATGAATAGAGCAGGCCAAGAAGCTGAGCAAGACACTACTCTGGAGGGTGTTAATACTGAAAGTGGACAAGAAGAAAGCAGGAAAGAGACAGAGAAAAAGTTGTCGCCTTTGTCAACACTGGAATCGTCTTTTGAGGTTCTTAATGTAAAGAAGTTTGATGCTGCATTTGTCGTGGATCCCCTCTATCGCCAGACAACAGCAAAATTTGACGAAGGTGGAGCTAAGGGTCTTTTAATGAATAATCTCGGTGTATATGGTGGATGTAGGGTGCTCTTTGATTCACAAGAAGTGCCTGCAAAGTGTATGGCAAGCCAAAATCAACATGATACTTCAGATACTATTGATCTTTCTTTTGCCAGAGATTGTATTGAGCAGATGGTATTGAACATGCGTGTGAAGGATGAAATTTCTCCAACCCTCAGGACTATAGTAAACCAATTCGATGAAGATAATAGAAGGCCTACTGATTTTCAACTCCAGAACTCAACTGAAGAGCTTCATGCTGATTTTAATTGTGAAAATGGGGCTGACAGAGAAGAATATGAGAACTGCACGACCTGGAATGATGATCATGATGACCAAACAGTTGTTGCTGATCTTGATTCTAATGTTGCAGATCCTAGTTTTCCTAGTTATCCTCAGGAAGATGAGCAATTTCCTTCCCAAGACCTTGATATGGAAGGCAGATTTGAAAATGTTGATGGGTATTTATTCTTGAGTCTGGGTTTTAGTTCAAAACAAAATGCATGGGCAGGCCCTGATCATTGGAAGTATCGAAAATCCAAAGGTGAAGTCTCCGAGGTTCAGCCTACTTCTGAAGATGGGACAACCCAAAAAACTAGGCAGCCGAGGAGTAAGAGACAAGCAGAAGTTGATTTAGATTTCACAAATTCTCTGGAGAAAAACAATTCAGATATATTTTCTCCTCCCAAGAATCCCAAATCGTTACTCCTCCCTGAAAGCAGACTGCCTTGCAATACAAAACTTCCAGAGGACTGCCACTATCAGCCAGAGGATCTTGTCAAGTTATTTCTTTTGCCGAATGTTAAGGTAGTTTCTTTAAGATATAAAAATTATATTGGTGTATTTGTAGATGGATCAAGAGAACAATGCAATGAGTATGATTCATTCCCTTCCTGGGATAATGGAAGTGTTGGTGGTGATGAGTCTGGTGATTATGAAGGTGATCATCATAGTGACATTGAGGACCCTGGCACTCTTATCACTCAGCCTCGTCAGGTCAATAAAATTGAGGTCCAGTATGACAAAACGTCCAAACAAGTTGATGTTCAGGCACTAAAAATTACTCTATGGGACCATGTTCAAGAATCTGTTAAACTTCCTTCTCAGGGTCAAAAAGAAATTATCTCTTTCAGGAATCTTTTAGGCAACTTTCCTAGCGAATGCAATGCAGCTGCAAACATTAGTGACATCTCTCCTCATTTGTGCTTCATATGTCTATTGCATTTGGCAAATGAGAAAGGATTGAGCATTCAAAGCTGCCCCAACTTGGATGATCTTGCAATATGCCTTCCTCATGTTGGTGATACTATAAGTGGAACAGCTTAG	2016	0.4271	MAETLSPNAAVGQKQRLRIQSPTSPFFLGSNDDQLERAQARAARAAAIRRKSLAVSQSLQANSDPCLNKQQILDLFHNCIKLASENKINQKNTWELNLIDHLTDIIKVEEEDDAETNFQKASCTLEAGVKIYSMRVDSVHSEAYKVLGGMNRAGQEAEQDTTLEGVNTESGQEESRKETEKKLSPLSTLESSFEVLNVKKFDAAFVVDPLYRQTTAKFDEGGAKGLLMNNLGVYGGCRVLFDSQEVPAKCMASQNQHDTSDTIDLSFARDCIEQMVLNMRVKDEISPTLRTIVNQFDEDNRRPTDFQLQNSTEELHADFNCENGADREEYENCTTWNDDHDDQTVVADLDSNVADPSFPSYPQEDEQFPSQDLDMEGRFENVDGYLFLSLGFSSKQNAWAGPDHWKYRKSKGEVSEVQPTSEDGTTQKTRQPRSKRQAEVDLDFTNSLEKNNSDIFSPPKNPKSLLLPESRLPCNTKLPEDCHYQPEDLVKLFLLPNVKVVSLRYKNYIGVFVDGSREQCNEYDSFPSWDNGSVGGDESGDYEGDHHSDIEDPGTLITQPRQVNKIEVQYDKTSKQVDVQALKITLWDHVQESVKLPSQGQKEIISFRNLLGNFPSECNAAANISDISPHLCFICLLHLANEKGLSIQSCPNLDDLAICLPHVGDTISGTA.	672

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g04576	671	MobiDBLite	consensus disorder prediction	154	184	-	-
	Seca4g04576	671	MobiDBLite	consensus disorder prediction	410	444	-	-
	Seca4g04576	671	MobiDBLite	consensus disorder prediction	170	184	-	-
	Seca4g04576	671	PIRSF	Condensin_H	511	661	IPR022816	GO:0000796\|GO:0007076
	Seca4g04576	671	PIRSF	Condensin_H	266	549	IPR022816	GO:0000796\|GO:0007076
	Seca4g04576	671	PIRSF	Condensin_H	1	271	IPR022816	GO:0000796\|GO:0007076
	Seca4g04576	671	PANTHER	CONDENSIN COMPLEX SUBUNIT 2	18	661	IPR022816	GO:0000796\|GO:0007076
	Seca4g04576	671	MobiDBLite	consensus disorder prediction	155	169	-	-
	Seca4g04576	671	MobiDBLite	consensus disorder prediction	428	443	-	-
	Seca4g04576	671	Pfam	Condensin complex subunit 2	24	503	IPR022816	GO:0000796\|GO:0007076
	Seca4g04576	671	Pfam	Condensin complex subunit 2	553	658	IPR022816	GO:0000796\|GO:0007076
	Seca4g04576	671	MobiDBLite	consensus disorder prediction	524	553	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g04576	Seca-Chr4	84448968	84452931	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g04576	K06676		-	gmx:100799781	1085.86

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca4g04576	4	84448968	84452931	Seca4g04576	4	84448968	84452931	ECH
	Seca4g04576	4	84448968	84452931	Seca4g04576	4	84448968	84452931	PCT