Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04564 ATGGCCATGGATTGCGGCGTCTATGGCGTCACCAAGCTCCGCATGTTCTACACTTTCCTCCTCCTTCTCTTTCTCTCTGCCTTCTCCCTCTCATCATCGGTTTCGACGGGTTCGGGTCAGGGTCAGATAAACTCAAACTCTATCCTGGTGGCTCTTCTGGACTCGCATTACACGGAGCTCGCAGAACTGGTGGAAAAAGCCATGCTTCTGCAAACTCTAGAAGATACAGTCGGGACCCACAACATCACCATTTTCGCGCCCAGAAATGAAGCTCTAGAGCGAGATCTCGACCCTGACTTCAAACGTTTCCTCCTTGAACCCCGAAACCTCAAGTCCCTTCAGACCCTCCTAATGTCTCACATCATCCCCACCCGAATCACCGGATCCCAAAACCTACCCGGGTCGACCCGACACCACACCCTCGCCGGACAACACCACCTCACTCTCGAAACAAACGAAACCGCACGCGATTGGACCGTCGACGGTGCTCGGATCCTCCACCCCGACGCGGTGACCCGACCCGATGGAGTCATCCACGGGATCGAGCGCCTCCTCATCCCTCGCTCCGTCCAAGACGACTTCAACCGACGCCGGAGCCTCACCTCCATTGCCGCCGTGAAGCCCGAGGGTGCACCGGAGGTGGACCCTCGTACCCACCGGCTGAAGAAACCAGCACCGCCGCAGAAACCCGGGTCCCCGCCAGCGCTTCCAATCTACGACGCAATGGCTCCGGGTCCAGCTATATCTCCGGCTCCGGCACCGGGACCCGGTGGACCCCACCACCACTTCAACGGCGAGGCGAAGGTCAAGGACTTCATCCAAACACTCCTCCACTATGGTGGGTACAATGAGATGGCAGATATTCTGGTGAACCTAACATCATTAGCCACTGAAATGGGTCGGTTAGTTTCTGAAGGTTACGTTCTCACGGTTCTTGCTCCCAATGATGAAGCCATGGCTAAGTTAACCACGGACCAGTTAAGCGAACCTGGTGCACCGGAACAGATCATGTACTATCATCTCATCCCAGAGTATCAAACCGAAGAGAGCATGTATAATGCGGTTCGGAGATTCGGTAAGGTCCGGTACGATACCCTCCGGTTACCACATAAGGTGCTTGCACAGGAAGCTGATGGGTCGGTGAAATTCGGGCATGGTGACGGGTCGGCTTATTTGTTCGACCCGGATATTTACACCGATGGTCGGATCTCAGTTCAAGGGATTGATGGGGTCTTGTTCCCACCTGAAGAGGAGCAGGATAAGCCCGTGAACCGTACCCGATCGGGTCAACCCGCTAAGGTTGTGGTAAAGCAGAGAAGAGGTGAAAATTGCTAG 1335 0.5536 MAMDCGVYGVTKLRMFYTFLLLLFLSAFSLSSSVSTGSGQGQINSNSILVALLDSHYTELAELVEKAMLLQTLEDTVGTHNITIFAPRNEALERDLDPDFKRFLLEPRNLKSLQTLLMSHIIPTRITGSQNLPGSTRHHTLAGQHHLTLETNETARDWTVDGARILHPDAVTRPDGVIHGIERLLIPRSVQDDFNRRRSLTSIAAVKPEGAPEVDPRTHRLKKPAPPQKPGSPPALPIYDAMAPGPAISPAPAPGPGGPHHHFNGEAKVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHLIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVLAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPPEEEQDKPVNRTRSGQPAKVVVKQRRGENC. 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04564 444 ProSiteProfiles FAS1/BIgH3 domain profile. 269 397 IPR000782 -
Seca4g04564 444 MobiDBLite consensus disorder prediction 226 240 - -
Seca4g04564 444 Gene3D FAS1 domain 288 415 IPR036378 -
Seca4g04564 444 SMART fasc_3 83 188 IPR000782 -
Seca4g04564 444 SMART fasc_3 310 415 IPR000782 -
Seca4g04564 444 MobiDBLite consensus disorder prediction 414 444 - -
Seca4g04564 444 Pfam Fasciclin domain 56 187 IPR000782 -
Seca4g04564 444 Pfam Fasciclin domain 294 413 IPR000782 -
Seca4g04564 444 ProSiteProfiles FAS1/BIgH3 domain profile. 44 185 IPR000782 -
Seca4g04564 444 SUPERFAMILY FAS1 domain 248 416 IPR036378 -
Seca4g04564 444 SUPERFAMILY FAS1 domain 31 188 IPR036378 -
Seca4g04564 444 Gene3D FAS1 domain 48 188 IPR036378 -
Seca4g04564 444 FunFam Fasciclin-like arabinogalactan protein 16 264 415 - -
Seca4g04564 444 MobiDBLite consensus disorder prediction 201 265 - -
Seca4g04564 444 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 8 442 IPR044654 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04564 Seca-Chr4 84311286 84314878 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04564 - - qsu:112040765 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04564 4 84311286 84314878 Seca4g04564 4 84311286 84314878 PCT