Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04553 ATGGGGAAGAACCAGAAGACAGAGCTAGGGAGGGCCCTGGTGAAGCAGCACAACCAGATGGTCCAACAAAGCAAGGAGAAAGGTCGCTTCTACAGAAAGAAGGTTCTTGAATCCTTCACCGAGGTCTCTGACATCGACGCCATCATCGAACAAGCCGACGAACCACAACTCGATCTTCCCCCAGCCCCACCCACCTTCCTCATCAATCTCAATAGGGATCCAGGCTCTGGTTCTAACGACATGACACCTGAAGAATCGAGGAAGCAGCAGAAGATAGAGGAAGCACTACACGCTAGCAGTCTCCGTGTTCCTCGAAGGCCACAGTGGAGTGCTGACATGTCCCCTGAGGAGCTTCATGCCAATGAAACACAAGCTTTCTTGATCTGGCGTCGCAGCCTAGCTAGACTTGAGGAAAATAAGAGGCTTGTCCTTACTCCGTTTGAGAAAAATCTTGACATCTGGAGACAGCTCTGGCGGGTTGTTGAGCGCAGTGATTTGCTTGTTATGGTCGTTGATGCACGAGATCCACTGTTCTATCGCTGTCCTGACCTTGAGGCTTATGCAAGAGAGGTTGATGAGCATAAACGCACATTGCTTTTGGTTAATAAGGCAGATCTTTTACCTGCTTCTATGAGAGAGAAATGGGCAGAATATTTTCGCGCTCATGATATTCTCTTCATCTTTTGGTCAGCTAAAGCTGCTACTGCAGCTCTGGAAGGCAAAAAGCTTGGTTCATCATGGGAGGCTGATATCTCAGGGAGAACTAATAACCCAGACACAAAGATATATGGAAGGGATGAGCTTTTGGCCCGCTTGCAATCAGAGGCAGAAGAGATAGTAAACATGAGGAGAAAGTCAGGCTCCTCTGATGCAGGGCCATCTACCATTAAATCCTCTGGTGAAAATGCTTCTGGCAGTTCGTCATCTGGTAATGTAGTTGTGGGGTTTGTTGGATATCCTAATGTGGGGAAAAGTTCAACTATTAATGCTTTGGTTGGTCAAAAACGGACTGGTGTCACCTCTACCCCGGGTAAAACAAAACACTTTCAGACATTAATTATTTCTGACAAACTGACCCTTTGTGATTGTCCTGGATTAGTTTTTCCATCTTTCTCAAGCTCAAGATATGAGATGATTGCTTGTGGGGTGTTGCCTATTGATAGGATGACTGAACACAGGGAATCTGTCCAGGTTGTAGCTGATAGAGTCCCAAGACATGTCATCGAGGAGATTTATAAGATTAATCTTCCTAAACCCAAGCCATATGAGTCCCAATCCCGCCCCCCTCTAGCATCTGAACTTTTGAGAGCATATTGTGCTTCTCGTGGGTATGTTGCTTCTAGTGGACTGCCTGATGAAACTAGGGCTGCTCGTCAGATACTGAAAGATTATATTGATGGGAAGCTGCCTCACTATGAAATGCCTCCTGGTGTATCAAATCAGGAACTAGCTTTGGAAGATCCCGCTGGACATGACTCAGTTAACTTGCATGTGTCAGATTCATCTGGTATTGAAGATTCTTCAGATGTTGCGAGTGAACAAGCACCAAATCTTGAACACGTATTGGATGACCTCAAATCATTTGACATGGCAAATGGACTTGCTTCAAAGAAAGATACTATCAAGAAGTCCAAGGCATCATCTCATAAGCACCATAGAAAGCCCCAGAGGAAAAAAGATCGTTCTTGGAGAGCAGGGAATGATGATGCTGATGGGATGCCAGTTGCAAGATTCTTTCAGAAACCAGTAAATACTGGCCATGTGAAGATTTGA 1773 0.4552 MGKNQKTELGRALVKQHNQMVQQSKEKGRFYRKKVLESFTEVSDIDAIIEQADEPQLDLPPAPPTFLINLNRDPGSGSNDMTPEESRKQQKIEEALHASSLRVPRRPQWSADMSPEELHANETQAFLIWRRSLARLEENKRLVLTPFEKNLDIWRQLWRVVERSDLLVMVVDARDPLFYRCPDLEAYAREVDEHKRTLLLVNKADLLPASMREKWAEYFRAHDILFIFWSAKAATAALEGKKLGSSWEADISGRTNNPDTKIYGRDELLARLQSEAEEIVNMRRKSGSSDAGPSTIKSSGENASGSSSSGNVVVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISDKLTLCDCPGLVFPSFSSSRYEMIACGVLPIDRMTEHRESVQVVADRVPRHVIEEIYKINLPKPKPYESQSRPPLASELLRAYCASRGYVASSGLPDETRAARQILKDYIDGKLPHYEMPPGVSNQELALEDPAGHDSVNLHVSDSSGIEDSSDVASEQAPNLEHVLDDLKSFDMANGLASKKDTIKKSKASSHKHHRKPQRKKDRSWRAGNDDADGMPVARFFQKPVNTGHVKI. 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04553 590 PRINTS GTP1/OBG GTP-binding protein family signature 360 375 IPR006073 GO:0005525
Seca4g04553 590 PRINTS GTP1/OBG GTP-binding protein family signature 314 334 IPR006073 GO:0005525
Seca4g04553 590 MobiDBLite consensus disorder prediction 538 590 - -
Seca4g04553 590 Gene3D - 153 370 IPR027417 -
Seca4g04553 590 MobiDBLite consensus disorder prediction 282 308 - -
Seca4g04553 590 Gene3D - 373 475 IPR023179 -
Seca4g04553 590 FunFam Large subunit GTPase 1 153 370 - -
Seca4g04553 590 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 444 IPR027417 -
Seca4g04553 590 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 154 369 IPR030378 GO:0005525
Seca4g04553 590 MobiDBLite consensus disorder prediction 543 560 - -
Seca4g04553 590 PANTHER LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED 1 564 IPR043358 GO:0003924
Seca4g04553 590 MobiDBLite consensus disorder prediction 71 90 - -
Seca4g04553 590 Coils Coil 265 285 - -
Seca4g04553 590 CDD HSR1_MMR1 153 369 - -
Seca4g04553 590 MobiDBLite consensus disorder prediction 287 308 - -
Seca4g04553 590 Pfam 50S ribosome-binding GTPase 314 370 IPR006073 GO:0005525
Seca4g04553 590 FunFam Large subunit GTPase 1 374 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04553 Seca-Chr4 84007709 84012696 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04553 K14539 - gmx:100817523 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04553 4 84007709 84012696 Seca4g04553 4 84007709 84012696 ECH