Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04496 ATGGGCGTTATCAGCGAAGACCCGAACCCGAAACCCATCGTGATCCGAGAAGTATGGGCATCCAACCTTGAATCCGAATTCGAACTCATCCGCGAACTGATCGATCGCTACCCTTTCATCTCCATGGATACTGAGTTCCCCGGCGTAATCTTCCGGCCCCACCACCACCACCACCATCACCGCCGTCCCTCCGATCACTACCGCCTCCTCAAGTCCAACGTCGATGCCCTCAACCTCATCCAGGTTGGACTCACCCTCTCCGACGCCGACGGCAACCTCCCCGATCTTGGAACCGGCGACAGCCAATTCATCTGGGAATTCAACTTCTCTGACTTCGACGTAGCGCGTGACGCCTACGCGCCGGACTCCATCGCCCTGCTCCAACGCCAGGGTATCGATTTTGCACGCAACGTCGCCGCCGGCGCCGATTCTGCCCGGTTCGCCGAGCTGATGATGTCGTCGGGACTCGTCTGCAACGACGCCGTGAGCTGGGTCACGTTCCACAGCGCGTACGATTTCGCGTACCTGGTGAAGATCTTGACCCGACGGAGCCTACCGACCCGGTTAGAGGAATTCTTGAGGATCGTTAGGGTGTTCTTTGGAAACGACGTTTATGACATAAAGCACATGATGCGATTCTGTGATACTCTCTATGGCGGTCTTGACCGGGTTGCCCGAACCCTCAATGTGGATCGGGCCGTCGGGAAGTGCCACCAAGCCGGGTCAGACAGCTTGCTGACGTGGCACGCGTTTCAGAAGATTAGGGACACTTATTTTGTAAAGGACGGGCATCAAAAACATGCCGGTGTATTGTTTGGGTTAGAGTTAGAGACCTTCTGTTAA 843 0.5611 MGVISEDPNPKPIVIREVWASNLESEFELIRELIDRYPFISMDTEFPGVIFRPHHHHHHHRRPSDHYRLLKSNVDALNLIQVGLTLSDADGNLPDLGTGDSQFIWEFNFSDFDVARDAYAPDSIALLQRQGIDFARNVAAGADSARFAELMMSSGLVCNDAVSWVTFHSAYDFAYLVKILTRRSLPTRLEEFLRIVRVFFGNDVYDIKHMMRFCDTLYGGLDRVARTLNVDRAVGKCHQAGSDSLLTWHAFQKIRDTYFVKDGHQKHAGVLFGLELETFC. 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04496 280 Gene3D - 4 277 IPR036397 GO:0003676
Seca4g04496 280 FunFam Putative CCR4-associated factor 1 7 5 278 - -
Seca4g04496 280 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 13 275 IPR039637 GO:0004535|GO:0030014
Seca4g04496 280 Pfam CAF1 family ribonuclease 18 141 IPR006941 -
Seca4g04496 280 SUPERFAMILY Ribonuclease H-like 14 273 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04496 Seca-Chr4 82462309 82463151 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04496 K12581 - gmx:100811298 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04496 4 82462309 82463151 Seca4g04496 4 82462309 82463151 ECH
Seca4g04496 4 82462309 82463151 Seca4g04496 4 82462309 82463151 PCT