Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04492 ATGGGAAGTTCTTCTTTGGTCTCAGCAGCTGCCGTAAGAAGAAGGCTTGAGGGGAAGGTGGCCCTTATCACTGGCGGTGCGAGCGGCATCGGTGAAGCCACTGCAAGACTCTTCTCAAAGCACGGAGCTCAAGTGGTTATAGCTGATATCCAAGACGACTTGGGTCACTCCGTTTGCAAAGACTTACCATCTGCTACTTACGTCCATTGTGACGTCACACAGGAAAACGACGTTGAAAACGCCGTTAACACAGCGGTTTCCAAGTATGGCAAACTAGACATCATGTTTAATAACGCCGGTATAACGGGCGTTAACAAAACCAACATAGTTGACAACAAGAAGTCCGAGTTTGAGGAAGTGATCAATGTTAACTTGGTTGGTGTCTTTCTCGGAACAAAGCACGCTGCAAGGGTCATGATCCCTGCTAAAACGGGAAGCATAATTAACACTGCTAGTGTGTGTGGAAGCATAGGTGGTGTGGCTTCACATGCCTACACAAGTTCAAAGCATGCCGTTGTGGGGTTGACGAAGAACACAGCGGTGGAGCTTGGATCATCTGGGATTCGGGTGAATTGCGTTTCGCCTTATGTTGTTGCAACACCGTTGGCTAAGAATTTCTTTAAGCTTGATGATGAGGGGGTTCAGGCGGTTTATTCCAACCTCAAAGGTACTGATCTTGTGCCAAACGATGTCGCTCATGCTGCCCTTTACTTGGGAAGTGATGAGTCTAAGTACGTTAGTGGTCACAACCTTGTGATAGATGGAGGGTTCACGGTGGTAAACAAAGGATTCTGTGTGTTTGGGCAATCCTAA 813 0.4748 MGSSSLVSAAAVRRRLEGKVALITGGASGIGEATARLFSKHGAQVVIADIQDDLGHSVCKDLPSATYVHCDVTQENDVENAVNTAVSKYGKLDIMFNNAGITGVNKTNIVDNKKSEFEEVINVNLVGVFLGTKHAARVMIPAKTGSIINTASVCGSIGGVASHAYTSSKHAVVGLTKNTAVELGSSGIRVNCVSPYVVATPLAKNFFKLDDEGVQAVYSNLKGTDLVPNDVAHAALYLGSDESKYVSGHNLVIDGGFTVVNKGFCVFGQS. 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04492 270 PRINTS Glucose/ribitol dehydrogenase family signature 221 241 IPR002347 -
Seca4g04492 270 PRINTS Glucose/ribitol dehydrogenase family signature 20 37 IPR002347 -
Seca4g04492 270 PRINTS Glucose/ribitol dehydrogenase family signature 186 203 IPR002347 -
Seca4g04492 270 PRINTS Glucose/ribitol dehydrogenase family signature 139 155 IPR002347 -
Seca4g04492 270 PRINTS Glucose/ribitol dehydrogenase family signature 165 184 IPR002347 -
Seca4g04492 270 PRINTS Glucose/ribitol dehydrogenase family signature 90 101 IPR002347 -
Seca4g04492 270 FunFam Short-chain dehydrogenase reductase 4 262 - -
Seca4g04492 270 Pfam Enoyl-(Acyl carrier protein) reductase 25 258 - -
Seca4g04492 270 CDD secoisolariciresinol-DH_like_SDR_c 15 258 IPR045309 GO:0016616
Seca4g04492 270 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 152 180 IPR020904 GO:0016491
Seca4g04492 270 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 13 261 - -
Seca4g04492 270 Gene3D - 6 267 - -
Seca4g04492 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 90 101 IPR002347 -
Seca4g04492 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 184 IPR002347 -
Seca4g04492 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 153 IPR002347 -
Seca4g04492 270 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 260 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04492 Seca-Chr4 82303686 82305219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04492 8 259 Acyl Lipid Metabolism Gene Families AT1G24360 31.660 1.70e-32 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04492 - - gmx:100782627 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04492 4 82303686 82305219 Seca4g04492 4 82303686 82305219 ECH