Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04477 ATGTCTGCTGCTTCAGCACCACCACCTGATAATACGGTTATAACAGAAAACATGGCTTCAGTTTCAAGCATCACCACCGTGCACCCTGACATCATCCACAACCACATCCTCACTCGCCTCGACCCCGCCACGCTGGCCACCGCCTCCTCCGTCTCCTCTCACCTGCGCCGCCTCTGCACCGACGAGGATCTCTGGCGAAACATCTCAACTGCCACGTGGCCCTCCCTGATGGACCCCATCGCCAGCCACGTCATCTCCACCTTCCCCGCCGGCCACCGTTCGATCTTCTCCGACGCATTCCCTTCCCTTCACCATTCCGCTTCCTATTCCGATCATCCTCACCCTCCTCCGCCGGAACTGATCTCCGCCGTCGACCTATACTACCAGGGAAAACCCATATTTTCCAGGGTCCAACGAACCGAAACCAAGAAGAACTGGTTTCTCTCCTCGCCGCTGTGGGTTGAAATGCTCGAACACGACGAGCTGGTCCCCACGCCGGTGAAGTTCGTGAGGAAGGACGAGGAGTTTCTGAAGCACTTGGAAGAGAGCTTGAGTTTGAGCTGGATCGTGATCGACCCGACCCGGAAGCGAGCGGCGAATGTGTCCAGCCGGAGGCCGGTGTCAGTGCGGCGGCACTGGCTGACGAGGGACTTGGAGGTTCTGTTCTCGGTGGTGATGGCGGGGGAGAGGCGACGGGCGACGGAGATGGTGCAGTGTATGGTGAAGGTCACGTGCTGTGGGAAGGTTGGGGGTGAGCTGCACGTGAGAGAGGTGAACCTGGTGATGGAGGACACCGAAGGAGCGCACGTGAGCGGGAAGGAAGGTGTGGTGATTCTGCAGAGGGCGATGGAGAATGGAGAGAGGAAGAAAGTGGATGTGGAAGCGACGAAGGAGAGTTTTGAGAAGTTCTCATCTTTAGTGAAAGAGAGTAGAGAGAGCAAGCATAGGAGACAGAAGGCACGGGATATTGTTTCTACATTGCTGGCATTCTTTGCTTGCGTCTTGTTTTGCTTCCTTGCTGGTTTATGA 1029 0.5666 MSAASAPPPDNTVITENMASVSSITTVHPDIIHNHILTRLDPATLATASSVSSHLRRLCTDEDLWRNISTATWPSLMDPIASHVISTFPAGHRSIFSDAFPSLHHSASYSDHPHPPPPELISAVDLYYQGKPIFSRVQRTETKKNWFLSSPLWVEMLEHDELVPTPVKFVRKDEEFLKHLEESLSLSWIVIDPTRKRAANVSSRRPVSVRRHWLTRDLEVLFSVVMAGERRRATEMVQCMVKVTCCGKVGGELHVREVNLVMEDTEGAHVSGKEGVVILQRAMENGERKKVDVEATKESFEKFSSLVKESRESKHRRQKARDIVSTLLAFFACVLFCFLAGL. 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04477 342 ProSiteProfiles F-box domain profile. 22 68 IPR001810 GO:0005515
Seca4g04477 342 Gene3D - 14 146 - -
Seca4g04477 342 PANTHER F-BOX PROTEIN-RELATED 19 338 IPR045283 -
Seca4g04477 342 SMART fbox_2 28 68 IPR001810 GO:0005515
Seca4g04477 342 Pfam F-box domain 32 66 IPR001810 GO:0005515
Seca4g04477 342 SUPERFAMILY F-box domain 29 93 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04477 Seca-Chr4 82106661 82107689 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04477 - - ccaj:109798917 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04477 4 82106661 82107689 Seca4g04477 4 82106661 82107689 ECH
Seca4g04477 4 82106661 82107689 Seca4g04477 4 82106661 82107689 PCT