Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04470 ATGGCGTCAAGAAAACCTCGCAATCGTGAAATGCTGTTCGATTCCGTTATCGCTCTCGTTTTCATCCTCGTCGCTTGCGTCGACCTCTGCGACGGCGCCACCGTCGTCGACGTCTACCGCCTCATCCAATACGACATGTCAGGTGTTCCCTTCGGATCTCGACTCGCCAGCCTCAACCAGCACGCAGCTTCCCTCCACTTCTCTCCCCACGCCGATCTCTCTCGCACCGTCCTCCTCATACCTCTTCGTGAACTCAACATGTCCTTTGTCAAAGAATATATTGCTGAAAGTAAGCCTTTGGGGGGCTTAATATTTTTGCTGCCCCAGATGTTCCGTTTTGAAAACAAAGGTGGTATGGGAAGTAGTCATCAAGATGGGAATGTAGAACTGCTGAAGAGTGTATTGGCTGAACTTGAACAAATACTTATACACACCAACTTACCTTATCCTGTCTATTTTGCTTTTGAGGATGATGATATTAATGCTGTGTTAACTGATATCAAGAAAAATGATGCCACTGGTCAGCCTGCTACTGCGACTACTGGCGGATACAAATTTGTTGTTTCAGCTCCAGAACCAAAGAAAGTTGTATCTCCACCCATTACAAATATTCAGGGATGGTTGGCAGGACTGAAGACAGATGATGATGCTCATCAATTACCCACCATTGCTATAGTGGCATCATATGACACCTTTGGGGCTGCTCCTGCATTATCAGTGGGAAGCGATAGTAATGGAAGTGGCATCGTGGCTCTTCTTGAAGTAGCTAGGTTATTTTCTCTTTTATATTCTAATCCAAAGACAAGAGGGCAATACAATCTTCTATTTGGGCTAACGTCTGGTGGGCCATACAACTACAATGGAACCCGTAAGTGGCTTCGGAGCTTGGATCAACGTTTGCGTGAGAGTATTGACTATGCTATTTGCTTAGATAGTATTGGCTCATGGGAAAATGATTTGTGGATTCATGTGTCTAAGCCTCCAGAAAATACTTATATTAAGCAAATTATGGAAGATTTTTCAAGTGTTGCAAAAGAGTTAGGCTTTAAAGTGAATCTGAAGCATAAGAAAATAAACATTTCAAATCCTCGAGTAGCTTGGGAGCATGAGCAGTTTTCAAGACTGAGAGTTACTGCTGCCACCCTCTCTGAACTCTCTACTGCACCTGAATTGCTAGAAAGGACTGGTGGTTTGGTTGACAGCAGGCATTTTGTCAATGAAGCTGCAGTTGTCAGAAGTGTGAAATTAATTGCTGAGAGTCTTGCGAGGCATATTTATGGACATCAAGGAAAGAACATCCAGATCTTTGCGGACAACAGTAACTTGGCTGTAAATCCTTCATATGTTCGATCATGGTTAGATGTTTTGTCCCAAACACCTCGAGTGGCACCATTTTTATCAAAAGATGATCCTTTTGTCATAGCACTGAAAAAGGAATTAGAAGATCATACTGATGAGGTCAATCTGCAACGAGAAGTGCTTGATGGGATGTTCACTTTCTATGATTCAACTAGGGCAAAGCTGAACATATATCAGGTTGCCAGTGTCACATTTGACTTGTTGTTGCTTCTAGTATTGGGATCGTATTTGATTGTGCTCTTCAGCTTCTTGGTCATCACAACTAGGGGTCTTGATGATCTAATCAGTTTATTTCGGCGGCCTCCTTCTCGAAAAGTGAAAACTGCATAG 1689 0.431 MASRKPRNREMLFDSVIALVFILVACVDLCDGATVVDVYRLIQYDMSGVPFGSRLASLNQHAASLHFSPHADLSRTVLLIPLRELNMSFVKEYIAESKPLGGLIFLLPQMFRFENKGGMGSSHQDGNVELLKSVLAELEQILIHTNLPYPVYFAFEDDDINAVLTDIKKNDATGQPATATTGGYKFVVSAPEPKKVVSPPITNIQGWLAGLKTDDDAHQLPTIAIVASYDTFGAAPALSVGSDSNGSGIVALLEVARLFSLLYSNPKTRGQYNLLFGLTSGGPYNYNGTRKWLRSLDQRLRESIDYAICLDSIGSWENDLWIHVSKPPENTYIKQIMEDFSSVAKELGFKVNLKHKKINISNPRVAWEHEQFSRLRVTAATLSELSTAPELLERTGGLVDSRHFVNEAAVVRSVKLIAESLARHIYGHQGKNIQIFADNSNLAVNPSYVRSWLDVLSQTPRVAPFLSKDDPFVIALKKELEDHTDEVNLQREVLDGMFTFYDSTRAKLNIYQVASVTFDLLLLLVLGSYLIVLFSFLVITTRGLDDLISLFRRPPSRKVKTA. 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04470 562 CDD M28_nicalin_like 135 428 - -
Seca4g04470 562 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Seca4g04470 562 SUPERFAMILY Zn-dependent exopeptidases 146 406 - -
Seca4g04470 562 Gene3D Zn peptidases 154 425 - -
Seca4g04470 562 PIRSF Nicalin 2 557 IPR016574 GO:0009966|GO:0016020
Seca4g04470 562 PANTHER NICALIN 11 562 IPR016574 GO:0009966|GO:0016020
Seca4g04470 562 Pfam Nicastrin 223 360 - -
Seca4g04470 562 ProSitePatterns EF-hand calcium-binding domain. 243 255 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04470 Seca-Chr4 81950741 81961134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04470 5 560 EF-hand Containing Proteins AT3G44330 73.929 0.0 851
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04470 K26499 - gmx:100778865 1024.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04470 4 81950741 81961134 Seca4g04470 4 81950741 81961134 ECH