Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04469 ATGACTCGCGTCTTGGTTCAAAGGGGTTCCTCTGGCGGTTCTTCTTCCAACCCGAACCCGAACCGGAACAACGGTTCCGGTTCGTCTTCTTCTTCTCGGGCCGAGCCGCAGGTTTCGGTTCCGCCGGCACCAAGAGACGAGGAGAGTGTAGAAGAGGTGGTGGGAGTGGTTGTTGGCGACGAAGTTTTGGAGAGTGGTGAGTGTAATAAAGCCAGAAGTGAGGACCCTTTGCTGGGTGGTCATCATTTTGAGCAGCACAATGATGGTTCGTGTGATGATGAAGTAGGTGCTGTTGTTGAGAGTGATGTTAAAGAAGAGGTTGTAGTAAAAGGTTTGAGTGGACTGAGAGAAAGACTTGCTTCAGAAATTGAGGGTTCCAGTGGGGATGCTGTTCCTCACCCTGGTGGTGGTGGTGGTTCGTGTCCACCACCGCCTCCTGTTCCACCTCCAAAGCCTTCTTCTGTGGCGAACTTGAATTCGAGGAGGAATACATCAGGGTCTTCGAATTCTGGCTGTGTGGGATCGTCTAGGAGAGCATCTGCATGGCCTCCTGTTTCAGCAAGGACCTCCCCTGCTGGCTCCCGGCCTTCGTCTCCCAGGTCCCATAATGAAAGTGAGGGGTACAATAGTGCTGATGAACAGAAGCCGTGCTTTGTTTCCTCTTATGATGATTTTGAAAGGGAGCGACAGTTTGAAATTGATATCAGAAGGGCAAAAAGTTATGAAGTAAAAAAGATGATGGAGGATGGGAATTGTCTTTTCCGTGCTGTGGCAGATCAGGTGTATGGGGATTCTGAATTGTATGATTTGGTCAGACAGATGTGCATTGATTATATGGAGCAGGAGAGAGATCACTTTTCTCAATTTATAACTGAAGGCTTCACATCATACTGTAAGAGAAAGAGAAGAGATAAGGTCTATGGAAACAATGTTGAGATCCAAGCCATGTGTGAAATGTATAATCGCCCCATTCATATATACTCCTACACTACAGAACCTATCAATATCTTTCATGGAAGCTATAACACAGACACACCACCAATTCGACTGAGTTATCATCATGGTAATCATTACAACTCCCTAGTTGACCCGCGGCGTTTGACAATTGGTGCTGGACTTGGGTTCAGCTGTCTTCGTGGAACTAATGTTGACAAAGATCGAGTCAAGGCTGCTATTAAAGCTCAACAAGATCAACAGATCAATAATATGATGATGACAACATTAATTTTTTTGTCTCCTTTCTTTCAACAGGCACTTTTAGCTGAGGGACGTTTTTACTCTGATCTTGAGCTGACAGAGAAGGAAATTGAACAAATGGTGATGGAAGTTTCTCGAGCTGAGTATCTTGCAGAGGGTACATTTAAGCAACAGCTTAGCCATAGAGAGTCATCTACCTCAAATGCTGAACCATCATCTTCTGGAGCAACTGGCACTGATTGCAAGATGGAACATGGTAAGGAGCATGGTTCTGATCTTAGTAGCAGCATGCAGATGTTACTGTCAATGGGATTTAGTTACCTCCAAGCGATTGAGGCTTACAGCATATTTGGGGATGATGTTGATTCTATGGTTTGTTACCTGTTAGAAACTGGCAGTAGCAGCAGACGTAAAGGTAAGGCCACTGAATGA 1629 0.4543 MTRVLVQRGSSGGSSSNPNPNRNNGSGSSSSSRAEPQVSVPPAPRDEESVEEVVGVVVGDEVLESGECNKARSEDPLLGGHHFEQHNDGSCDDEVGAVVESDVKEEVVVKGLSGLRERLASEIEGSSGDAVPHPGGGGGSCPPPPPVPPPKPSSVANLNSRRNTSGSSNSGCVGSSRRASAWPPVSARTSPAGSRPSSPRSHNESEGYNSADEQKPCFVSSYDDFERERQFEIDIRRAKSYEVKKMMEDGNCLFRAVADQVYGDSELYDLVRQMCIDYMEQERDHFSQFITEGFTSYCKRKRRDKVYGNNVEIQAMCEMYNRPIHIYSYTTEPINIFHGSYNTDTPPIRLSYHHGNHYNSLVDPRRLTIGAGLGFSCLRGTNVDKDRVKAAIKAQQDQQINNMMMTTLIFLSPFFQQALLAEGRFYSDLELTEKEIEQMVMEVSRAEYLAEGTFKQQLSHRESSTSNAEPSSSGATGTDCKMEHGKEHGSDLSSSMQMLLSMGFSYLQAIEAYSIFGDDVDSMVCYLLETGSSSRRKGKATE. 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04469 542 MobiDBLite consensus disorder prediction 457 489 - -
Seca4g04469 542 MobiDBLite consensus disorder prediction 1 37 - -
Seca4g04469 542 MobiDBLite consensus disorder prediction 120 214 - -
Seca4g04469 542 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 489 530 IPR015940 -
Seca4g04469 542 PANTHER OTU DOMAIN CONTAINING PROTEIN 170 371 - -
Seca4g04469 542 CDD OTU_plant_OTU6-like 237 363 - -
Seca4g04469 542 MobiDBLite consensus disorder prediction 1 93 - -
Seca4g04469 542 MobiDBLite consensus disorder prediction 154 176 - -
Seca4g04469 542 Pfam OTU-like cysteine protease 249 358 IPR003323 -
Seca4g04469 542 MobiDBLite consensus disorder prediction 65 93 - -
Seca4g04469 542 MobiDBLite consensus disorder prediction 137 153 - -
Seca4g04469 542 MobiDBLite consensus disorder prediction 457 478 - -
Seca4g04469 542 Gene3D - 223 374 - -
Seca4g04469 542 FunFam OTU domain-containing protein 5 222 374 - -
Seca4g04469 542 SUPERFAMILY Cysteine proteinases 230 364 IPR038765 -
Seca4g04469 542 MobiDBLite consensus disorder prediction 190 205 - -
Seca4g04469 542 SUPERFAMILY UBA-like 490 531 IPR009060 GO:0005515
Seca4g04469 542 ProSiteProfiles OTU domain profile. 241 364 IPR003323 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04469 Seca-Chr4 81934316 81940112 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04469 K12655 - gmx:100809162 731.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04469 4 81934316 81940112 Seca4g04469 4 81934316 81940112 ECH