Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04465 ATGGCGATCCTCTACGCTTTGGTGGCCAGAGGCACGGTGGTTCTTGCGGAGTTCAGCGCCGTCACCGGAAACACAGGCGCCGTCGCCCGCCGTATACTTGAGAAGATTCCGGCAGAGTCCGACTCCAGGCTTTGCTTCTCTCAGGATCGATACATCTTTCACATACTCCGATCCGATGGCCTCACCTACCTCTGTATGGCCAACGACACCTTTGGAAGGAGAATCCCTTTCTCATACTTGGAAGACATCCAAATGAGGTTTATGAAGAACTATGGTAGAGTTGCCAATTATGCACCAGCTTATGCAATGAATGATGAGTTTTCAAGGGTTTTGCATCAGCAAATGGAGTTTTTCTCCAGTAATTCTAGCGCTGATACCCTGAATCGTGTGAGGGGTGAAGTTGGTGAGGCAAGTACATACCAAAGAAAACTTTGTACCTCCCTAATACGCACTATCATGGTGGACAATATTGAGAAAATATTGGAGAGAGGTGACCGGATCGAACTTCTTGTTGATAAGACAGCAACAATGCAAGACAGTTCATTTCACTTTAGGAAACAATCAAAGCGCCTTCGAAGAGCTCTTTGGATGAAAAATTTCAAACTCCTGTGA 612 0.4624 MAILYALVARGTVVLAEFSAVTGNTGAVARRILEKIPAESDSRLCFSQDRYIFHILRSDGLTYLCMANDTFGRRIPFSYLEDIQMRFMKNYGRVANYAPAYAMNDEFSRVLHQQMEFFSSNSSADTLNRVRGEVGEASTYQRKLCTSLIRTIMVDNIEKILERGDRIELLVDKTATMQDSSFHFRKQSKRLRRALWMKNFKLL. 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04465 203 FunFam Vesicle-associated membrane protein 714 1 124 - -
Seca4g04465 203 SUPERFAMILY SNARE fusion complex 149 200 - -
Seca4g04465 203 ProSiteProfiles Longin domain profile. 7 111 IPR010908 -
Seca4g04465 203 SMART Longin_2 28 110 IPR010908 -
Seca4g04465 203 CDD R-SNARE 125 196 - -
Seca4g04465 203 Gene3D - 147 200 - -
Seca4g04465 203 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 138 198 IPR042855 -
Seca4g04465 203 Pfam Regulated-SNARE-like domain 29 108 IPR010908 -
Seca4g04465 203 CDD Longin 4 118 IPR010908 -
Seca4g04465 203 FunFam Vesicle-associated membrane protein 7 124 203 - -
Seca4g04465 203 Pfam Synaptobrevin 149 202 IPR042855 -
Seca4g04465 203 ProSitePatterns Synaptobrevin signature. 156 175 IPR001388 GO:0016020|GO:0016192
Seca4g04465 203 SUPERFAMILY SNARE-like 3 118 IPR011012 -
Seca4g04465 203 Gene3D Longin domain 1 126 - -
Seca4g04465 203 PANTHER SNARE PROTEINS 1 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04465 Seca-Chr4 81899842 81903844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04465 1 203 Miscellaneous Gene Families AT5G22360 82.843 2.11e-123 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04465 K08515 - gmx:100780787 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04465 4 81899842 81903844 Seca4g04465 4 81899842 81903844 ECH