Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04442 ATGACCGAGGTGCTACATTCCCCAACATCAACATCACGTTTTTCTTCATCTTCTTCCTCTGATGGCATTCTCCTTCTGAGCAGCAATGACCAAGAACCACCACCACCCTCCTCTTCTGTAGCAGCAACCGTGGCGGTAGTGGACGGTTTTTCTACGGCCACTGACTGTGACACACGAGAGATCACGGTCACGGAAGGGGACAGGACACAGGAGGAGCTGTCCCTTTTGGCCATTCTTGTGACTCTTTTAAGGAAGTCATTGGTTACTTGCAAGAGTGACGTGAGAGAGCTCTGCGCCATGGAGATCGGTTGGCCTACTAATGTGCGCCATGTTGCGCATGTCACCTTTGATAGGTTCAATGGTTTCTTGGGTTTGCCTGTTGAGTTTGAACCTGAAGTCCCCAGAAGACCTCCCAGTGCTAGTGCAACTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTATCATATGACACAAGAGGGAACATTGTGCCAACAATTCTGTTATTAATGCAAAGGCACTTGTATGCTCAAGGAGGGTTGCAGGCAGAGGGGATTTTCAGAATTAATGCAGACAATAGTCAAGAGGAATATATCAGGGATCAACTAAATGGAGGATTGGTCCCAGAAGACATTGATGTACATTCCCTGGCAGGGCTAATTAAGTTCTTGGTACTTTTCAAGGCTTGGTTCAGGGAACTGCCTAGAGGTATTCTGGATTCTTTATCGCCAGAGCAGGTAATGCAATGTCAGACTGAAGAGGATTGTGCTGAACTGGCAAGGCAGCTACCTGAAACTGAAGCTTCCCTTTTGGATTGGGCTATCAATCTGATGGCTGATGTTGCCCAAGGGGAACATCTGAATAAGATGAATGCACACAACATTGCCATGGTTTTTGCACCAAACATGACTAAGATGGCAGACCCTTTGACTGCATTGATGTATGCAGTTCAAGTGATGAACTTCTTGAAGACACTCATATTGAGGACACTGCGGGAAAGAAAGGATTCTGTGGTAGAAACATCTCCTGGATTTTATTTTGAGCCTTCTGATGAGAATGGGGACTATAGTCCTTTTGAGTCCTGCCAGCAAGATGTTGCCGCAGAAAATGAAGAGGCTGGGGAAACCTTTGTTTGTGAGGAAACTGTTTTAGAATGTTCACCTGAATCCATCCAAAACAAATATTCAATTGAAGGAGAACCTGACAGTTTGATAAGCTCTTCTGAGAATCTAGTTCGCGATGAAGATTTGTATTGTGATTTTCCACCCAAAGGAAACATTGGGAAGAGTAAGACTGGTCAATCAAGTAACTCAAGTTCTAAAAAGGGCCCCAAAAAAACCAGGGGCCAGCAACCTGTGATCCTTGGAACAGTGGCTGTTGAGAAAAAGGGTATTAGCAATTTAAGCTGCATAGATTCAAGATCAGAGCGGATAGAAGCCTGGCGATGA 1446 0.4502 MTEVLHSPTSTSRFSSSSSSDGILLLSSNDQEPPPPSSSVAATVAVVDGFSTATDCDTREITVTEGDRTQEELSLLAILVTLLRKSLVTCKSDVRELCAMEIGWPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRPPSASATVFGVSTESMQLSYDTRGNIVPTILLLMQRHLYAQGGLQAEGIFRINADNSQEEYIRDQLNGGLVPEDIDVHSLAGLIKFLVLFKAWFRELPRGILDSLSPEQVMQCQTEEDCAELARQLPETEASLLDWAINLMADVAQGEHLNKMNAHNIAMVFAPNMTKMADPLTALMYAVQVMNFLKTLILRTLRERKDSVVETSPGFYFEPSDENGDYSPFESCQQDVAAENEEAGETFVCEETVLECSPESIQNKYSIEGEPDSLISSSENLVRDEDLYCDFPPKGNIGKSKTGQSSNSSSKKGPKKTRGQQPVILGTVAVEKKGISNLSCIDSRSERIEAWR. 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04442 481 CDD RhoGAP 164 326 - -
Seca4g04442 481 Gene3D Rho GTPase activation protein 135 337 IPR008936 -
Seca4g04442 481 SMART PBD_5 102 136 IPR000095 -
Seca4g04442 481 SUPERFAMILY GTPase activation domain, GAP 142 327 IPR008936 -
Seca4g04442 481 ProSiteProfiles Rho GTPase-activating proteins domain profile. 147 338 IPR000198 GO:0007165
Seca4g04442 481 MobiDBLite consensus disorder prediction 427 445 - -
Seca4g04442 481 CDD CRIB 100 140 - -
Seca4g04442 481 PANTHER MKIAA1688 PROTEIN 1 448 IPR044785 GO:0005096
Seca4g04442 481 FunFam Rho GTPase-activating protein 5 132 331 - -
Seca4g04442 481 MobiDBLite consensus disorder prediction 1 38 - -
Seca4g04442 481 ProSiteProfiles CRIB domain profile. 102 115 IPR000095 -
Seca4g04442 481 Pfam P21-Rho-binding domain 101 127 IPR000095 -
Seca4g04442 481 MobiDBLite consensus disorder prediction 422 453 - -
Seca4g04442 481 Gene3D CRIB domain 98 131 IPR036936 -
Seca4g04442 481 Pfam RhoGAP domain 164 304 IPR000198 GO:0007165
Seca4g04442 481 SMART RhoGAP_3 161 330 IPR000198 GO:0007165
Seca4g04442 481 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04442 Seca-Chr4 81479065 81482804 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04442 - K20642 gmx:100784019 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04442 4 81479065 81482804 Seca4g04442 4 81479065 81482804 ECH
Seca4g04442 4 81479065 81482804 Seca4g04442 4 81479065 81482804 PCT