Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04409 ATGAAGGTTCATGAAACGAGGTCGCATGTTCATGCACCTGGGGGAGAAGAAGAGAAGGTGATGACAAGGAAGCAGAAGGCTGAGTCAAAGGCACATGAAGTAGAGCATTCTCCTAAAAAGGCCAAGGTGGAAACTGAGGATGGTCAAATGAATGGAAAATCTGTAGCTGATGTTGCAGAAGAATATGATGAGTTCTGTAAAGCCACAAATGAGCACCTCACTTTAGAGCAAATGCGAGAAATTCTGGAGGCTAATGGTCTTGATTCCTCTGGTTCTGATCTTGAAATTAAACGAAGATGCCAAGACTTGCTGTTTTATGGTGCAATGGAGAAATGCTCAGTTTGTAATGGCAATTTGGAGTTTGATGGCAGACGTTATGCTTGCAGAGGATTCTACAGTGAATGGGCTAGTTGCACTTTCACCACCAGGGACCCTCCAAGGAAAGAGGAGCCTACAAAGCTACCAGATTCTATTCAGAATTCCTTGGTTTCAGATTTGCTGAAGAAGTATCAGGACCCAAGTCGCAGGCCTCACAGGGATTTAGGCTCAGCTGTAAAACCTTTTACTGGAATGATGATATCTCTGATGGGTCGTCTTACTCGGACACATCATTATTGGAAAACAACTATTGAAAAGCATGGAGGGAAGGTGGTAAACTCTATTATTGGGGCAACCTGTTTGGTGGCTTCACCTGCTGAGCGAGAACGTGGTGGCACATCCAAGCTTGCAGAAGCCATGGAGAGGGGTATACCTGTGGTTAGGGAGGCTTGGTTAACTGACAGCATTGAGAAGCAAGAACCACAACCTTTGGAAGCTTATGATCTTGTCTCTGATCTTTCTGTTGCTGGCAAGGGAATCCCCTGGGACAAACAAGATCCTGGGGAGGAGGCTATTGAATCACTCTCTGCAGAACTCAAGCTCTATGGGAAGAGAGGGGTCTACAAGGATACCAAGTTGCAAGAACAAGGTGGAGAGATATTTGAAAGAGATGGGATATTGTACAACTGTGCCTTCTCCCTTTGTGACCAAGGGCGAAGACTGAATGACTACTGTATCATGCAACTGATTGTTGTCCCAGAGAATCGTTTGCATCTGTATTTTAAAAAGGGGAGAGTTGGCGATGATCCAAATGCAGAGGAGCGATTAGAAGAGTTCAAGGATGTGGACAATGCTCTTAAAGAGTTTGTGAGGCTCTTTGAGGAAATAACAGGAAATGAATTTGAATCTTGGGAAAGAGAGAAGAAGTTCCAAAAGAAGCCATTGAAGTTTTACCCCATTGACATGGATGATGGAGTTGAAGTTAGACATGGTGCGCTAGGACTTCGGCAGCTGGGAATTGCAGCAACACACTGTAAACTTGAGCCTCTGGTTGCAAATTTTATGAAGGTTTTGTGCAGCCAGGAGATATACAAGTATGCGTTGATGGAAATGGGTTATGACTCTCCAGACCTTCCAATAGGAATGGTTACAAATCTTCACCTGAAAAGATGTGAGGAAGTTCTGTTAGAATTCATAGAGAAAGTGAAATCATTGAAGGAGACTGGGCCCAAGGCTGAAGCTGTTTGGTCTGATTTTAGCCAGAGATGGTTCACTCTGATGCACTCCACAAGGCCTTTCATTTTTAGAGATTACCAGGAGATTGCAGAACATGCTGCTGCTGCCCTGGAGGGTGTTAGAGACATAACCGTTGCTTCTCACCTCATAGGGGATATGAGTGGCTCTACCATTGATGACCCATTATCAGATACATACAAGAAATTGGGTTGCTCAATTTCTCCCTTGGAAAAAAATTCAGATGATTATGAGATGATTGTGAAGTACCTTGAAAAAACTTATGAACCAGTCAAAGTCGGTGACACTGAATATGGGGTGTCAGTTGAAAACATTTTTGCTGTGCAAACGAGTGCTTGCCCTTCCTATGAAGACATAGTAAAGCTGCCAAACAAGGTTCTTCTATGGTGTGGTAAGACAATCTAG 1977 0.4375 MKVHETRSHVHAPGGEEEKVMTRKQKAESKAHEVEHSPKKAKVETEDGQMNGKSVADVAEEYDEFCKATNEHLTLEQMREILEANGLDSSGSDLEIKRRCQDLLFYGAMEKCSVCNGNLEFDGRRYACRGFYSEWASCTFTTRDPPRKEEPTKLPDSIQNSLVSDLLKKYQDPSRRPHRDLGSAVKPFTGMMISLMGRLTRTHHYWKTTIEKHGGKVVNSIIGATCLVASPAERERGGTSKLAEAMERGIPVVREAWLTDSIEKQEPQPLEAYDLVSDLSVAGKGIPWDKQDPGEEAIESLSAELKLYGKRGVYKDTKLQEQGGEIFERDGILYNCAFSLCDQGRRLNDYCIMQLIVVPENRLHLYFKKGRVGDDPNAEERLEEFKDVDNALKEFVRLFEEITGNEFESWEREKKFQKKPLKFYPIDMDDGVEVRHGALGLRQLGIAATHCKLEPLVANFMKVLCSQEIYKYALMEMGYDSPDLPIGMVTNLHLKRCEEVLLEFIEKVKSLKETGPKAEAVWSDFSQRWFTLMHSTRPFIFRDYQEIAEHAAAALEGVRDITVASHLIGDMSGSTIDDPLSDTYKKLGCSISPLEKNSDDYEMIVKYLEKTYEPVKVGDTEYGVSVENIFAVQTSACPSYEDIVKLPNKVLLWCGKTI. 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04409 658 SMART BRCT_7 185 265 IPR001357 -
Seca4g04409 658 Pfam BRCA1 C Terminus (BRCT) domain 186 262 IPR001357 -
Seca4g04409 658 Pfam Poly(ADP-ribose) polymerase, regulatory domain 451 584 IPR004102 GO:0003950
Seca4g04409 658 ProSiteProfiles BRCT domain profile. 183 275 IPR001357 -
Seca4g04409 658 ProSiteProfiles PARP catalytic domain profile. 578 658 IPR012317 GO:0003950
Seca4g04409 658 SMART WGR_cls 334 417 IPR008893 -
Seca4g04409 658 ProSiteProfiles SAP motif profile. 70 104 IPR003034 -
Seca4g04409 658 Pfam PADR1 (NUC008) domain 99 148 IPR012982 GO:0008270
Seca4g04409 658 CDD WGR_PARP1_like 326 430 - -
Seca4g04409 658 Pfam Poly(ADP-ribose) polymerase catalytic domain 598 655 IPR012317 GO:0003950
Seca4g04409 658 FunFam Poly [ADP-ribose] polymerase 445 587 - -
Seca4g04409 658 Gene3D - 588 658 - -
Seca4g04409 658 PANTHER DNA LIGASE 20 656 - -
Seca4g04409 658 MobiDBLite consensus disorder prediction 1 47 - -
Seca4g04409 658 Pfam WGR domain 334 412 IPR008893 -
Seca4g04409 658 Gene3D - 108 171 IPR038650 -
Seca4g04409 658 SMART PADR1_2 96 149 IPR012982 GO:0008270
Seca4g04409 658 Coils Coil 494 514 - -
Seca4g04409 658 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 450 586 IPR036616 GO:0003950
Seca4g04409 658 SUPERFAMILY BRCT domain 172 287 IPR036420 -
Seca4g04409 658 Gene3D - 446 587 IPR036616 GO:0003950
Seca4g04409 658 MobiDBLite consensus disorder prediction 1 51 - -
Seca4g04409 658 CDD BRCT_PARP1 188 263 - -
Seca4g04409 658 Gene3D - 34 107 - -
Seca4g04409 658 SUPERFAMILY ADP-ribosylation 587 655 - -
Seca4g04409 658 SUPERFAMILY WGR domain-like 299 428 IPR036930 -
Seca4g04409 658 ProSiteProfiles PARP alpha-helical domain profile. 450 569 IPR004102 GO:0003950
Seca4g04409 658 ProSiteProfiles Generated from MSF file: '/work/www/psmaker/tmp/pfmake.input.483415'. 42 180 IPR047572 GO:0008270
Seca4g04409 658 ProSiteProfiles WGR domain profile. 323 423 IPR008893 -
Seca4g04409 658 Gene3D BRCT domain 182 282 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04409 Seca-Chr4 80883381 80888206 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04409 K10798 - gmx:548024 1227.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04409 4 80883381 80888206 Seca4g04409 4 80883381 80888206 ECH