Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04408 ATGCCTAAAGTTTCCGAAGAAAAAGATGGATCTGAAACGAAGACATTCAATTCCATCGATTCCTTTCCACATTTAGCATCAACAAAATCCAATTGCTCTCTTAAGAACTCGCTCCCAATGAAACGCACCGTTCGCCCTCTCTTCGTGCTTCTCCTCCTCCTCGTCTTCGTTGCCACGCTCACCTCGCGCGCCGTGGTTCGCAGGGGAATGCTCTCCATCGAGCTCGAAACTCGCATCCACGATCCTCCGCCGCCGCCGCCGCCGTTCAACGCCACGCTTCTCCAACACGCCGCCATCGAAATCGGCGAGGAGAAAACTAAGCAGGAAATCCAGCAGCTCCTCGACGGCAACTTCGGCAGCCAAGCGCGCCACCGGACCTTCGTTTCGTGGCGGCGGTTCATCCACCATGACGTCGAGAAGAACCACCTCCCGGCGACGATCCGTTCGCCGCTGTTCTATCGGTACTGGTTGGATTTCCGGCGAGTCTTGCACGATTGGGCACGGAAGCGCCGATTCCAACCCGGCATCATGTCCGAGTTGACTCGGTCAGTGAAGGGTCCAATCGACCGGCATAACGGAGTTTTGGTTGGTTCTGGTGACAAGAAGTACTCTTCATGTGCGGTTGTTGGTAACAGTGGGATTTTGCTCAATAGGGACTATGGTTCACTAATTGATGCACATGAGGTTGTTATAAGGTTGAACAATGCTAGGGTTGATAACTTTGAAACTAAGGTTGGGAAGAAAACTAGCATTTCCTTTGTGAATAGCAACATTTTGCATTTGTGTGCTAGAAGGGCAGGGTGTTTTTGTCACCCTTATGGTGCTCAAGTGCCTATTGTTATGTATATTTGCCAAGCTGTGCATTTCTTGGATTACACTGTGTGCAATGCGTCTCACAAGGCTCCTTTGTTGGTTACTGATCCTAGGTTTGATGTGTTGTGTGCTAGAATTGTCAAGTATTATTCTTTGAAGAGGTTTGTGGAGGAGACAGGGAAGGGTTTGGAGCAATGGGGTTCTGCTCATGATGGGGCTCTCTTTCATTATTCTTCTGGTATGCAGGCTGTGATGTTGGCTTTGGGAATCTGTGATAAAGTTACCATTTTTGGGTTTGGTAAATCAACTTCTGCTAAACATCACTACCATACCAACCAGAAGGCTGAGCTTCACTTGCATGATTATGAAGCTGAATATGAGTTTTACCGTGATCTTGTGGATGGGCACAAGCCTATACCATTTCTCTCGGACAAGTTCAAGTTTCCTCCTGTTGTCATGTATCAGTAA 1281 0.484 MPKVSEEKDGSETKTFNSIDSFPHLASTKSNCSLKNSLPMKRTVRPLFVLLLLLVFVATLTSRAVVRRGMLSIELETRIHDPPPPPPPFNATLLQHAAIEIGEEKTKQEIQQLLDGNFGSQARHRTFVSWRRFIHHDVEKNHLPATIRSPLFYRYWLDFRRVLHDWARKRRFQPGIMSELTRSVKGPIDRHNGVLVGSGDKKYSSCAVVGNSGILLNRDYGSLIDAHEVVIRLNNARVDNFETKVGKKTSISFVNSNILHLCARRAGCFCHPYGAQVPIVMYICQAVHFLDYTVCNASHKAPLLVTDPRFDVLCARIVKYYSLKRFVEETGKGLEQWGSAHDGALFHYSSGMQAVMLALGICDKVTIFGFGKSTSAKHHYHTNQKAELHLHDYEAEYEFYRDLVDGHKPIPFLSDKFKFPPVVMYQ. 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04408 426 Gene3D Glycosyl transferase family 29 154 409 IPR038578 -
Seca4g04408 426 PANTHER BETA-1,6-GALACTOSYLTRANSFERASE GALT29A 40 426 - -
Seca4g04408 426 Coils Coil 383 403 - -
Seca4g04408 426 Pfam Glycosyltransferase family 29 (sialyltransferase) 198 405 IPR001675 GO:0006486|GO:0008373
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04408 Seca-Chr4 80881153 80882433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04408 201 370 Glycosyltransferase AT3G48820 24.118 1.16e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04408 K00786 - gmx:100816284 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04408 4 80881153 80882433 Seca4g04408 4 80881153 80882433 ECH