Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04386 ATGGGGTTTGTAGCATCACCGAGTAGCTTTTGCTTCCTACACTCTCCTTCCTTATACCAATTCCCCTTCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCGCCCCAGAAAAAATGGACGCTTCAACACTGAGTTCCGAGCTCCAACTGCGTCTTGCTTGCGCCAGCACGACCCAATCTGCAATCAGAGAAGGGCATTTCTCTTGATGGGTATCGCTGTTCTTCCCTTTCTACCATTCAACACTGCCCAAGCTCTTGATGGATCCCTCCAAACCCCAAAAGAAAGTGAGGTGAAGACACCAGAGGATAACCAGAAAGCAGAGACAGCATCTGAAATGAACAAACCATCCAATTCCTTTCTCTCTCTCCTGAATGGGATTGGAATATTTTCTTCTGGCGTGTTGGGCGCTCTCTATGCAATCGCTCAGAAAGAAAAGTCCACTGCTGTTGCAACAATAGAAACAATGAGCAACAAATTGAGGGAAAAGGAAGAGCTGATTGTTTCCTTGAAGAGGGACTATGAATTGAAGTTACTGAATGAGCAGGAGGAACAAGCCAAGCTACTTGGAAAGGCAAAGGAAGAGCAGCAAGCATTGATAAACCAACTAAATTCTGCAAACAGTACTATCGCCCGCTTGGGACAAGAGCTAAAGAGTGAGAAAAGTTTGATTGAGGAGCTGAAACTTCAAATTGACAGACTTGAAACTAAGCTTTCAAAGACTGATAGAGATAAGAAGGATCTTGAAGACAATTTGAAAGAAAAGGTAGATTCTATTGAAATTTTACAGAAAAGAATTGATCTACTGGGTGTGGATCTCAAGGGCAAAGAAGATGTTGTTCAGAATCTGAGTTCATCCCTTGCAGAAAAGGAGTTGGAATTGAAGAATTTGAATTCTACCTATGAGCAAACCAAGGATGACTTATCCAATGCTCATTTTCAGATTCAACGGTTGAATGATGAAATACTGAAAAGCCGAGAGGAACTAGAAGGAAAAGATTCCTTGGTGATGGAACTAAATTCAAGAGTAAGTTCCTTAACTCTTGAGAACAATGATTTGAGCAGTAAAAATGATGTTATGGAGAAGGAATACAATGACCTAAAGTTGACTGCTGAAAAGAAGGCTGCTTTGGATGCTAAAGTATTAAGAGAAAAAGAAGAGGAGCTTAATCAGCTAAAGGATAAATTTGAACTTGCCCTAGTTGAAGCAATCAGAAAGCAGGACATCATTGCCAATTTAACCCAAGAACGAGAAGGTTTAAAGGAGTCTCTAGAGAATGAATCTAAGAAAGTGAATCATTTGAGGTATGAACTCGAAGTCACCCAGGAGAATCTTGGAAAATCAAGAAATGAGTCTGCTGAATTGGAAAAACATATAAATCAGTCAAATGAATTACGCAAAGAGCTTGAGCTTGAGGTCTCTAAGCTTTCATCTGAGCTCACTGAAGTTAAAGAGTCACTACAGAGTAGACTTGATGATGCAAAGCATGGGGCAGAAATGCTAGCTAGTGAGCTTACAACAGCAAAGGAACATTTGAAGAAAACACAGGCAGAGCTGCAAAGTATGTCTCATGAATTAACAGCTGCTCTTGAAAACCGTGATAGACTGCAAAGAGAATTAATTGACATCTACAAAAAGGCTGAAACCACAGCAGAGGATTTGAAGGAGGAAAAACAGTTAGTTGCTTCTTTGAACAAAGAACTACAAGCTTTGGAGAAGCAAGTTTCAAAAGACAAGGAGGCCCGCAGATCTCTTGAAATGGACTTGGAGGAGGCTACTAAATCACTAGATGAAATGAACCGAAATGCATTGATCCTTTCAAGTGAACTAGAGGGAGCTAAATCTCTTATTTCTAGTCTTGAAAATGAGAAAGAGGTGATTTCCAAGTCCCTTATTGAACAAAGAAATGCAAACAAAGAGGCCCAGGAAAACATTGAAGATGCTCATAACCTCATCATGAAACTTGGCAAAGAGAGAGAGAATTTAGAAAGCAGAGGGAAGAAATTGGAGGAGGAATTGGCTTCTGCCAAGGGTGAAATATTGCGGTTGAGGAGTCAGATAAATTCTTCAAAAGTTGCTGTTAACAATGAGAAAGTGCAGAAAGATGACAGTGAAACTGGGGTCACTGTAAGTGCACGGAAGACTGTAAGAAGAAGAAAGACTAACCCACAATAA 2172 0.4033 MGFVASPSSFCFLHSPSLYQFPFPSSSSSSSSSRPRKNGRFNTEFRAPTASCLRQHDPICNQRRAFLLMGIAVLPFLPFNTAQALDGSLQTPKESEVKTPEDNQKAETASEMNKPSNSFLSLLNGIGIFSSGVLGALYAIAQKEKSTAVATIETMSNKLREKEELIVSLKRDYELKLLNEQEEQAKLLGKAKEEQQALINQLNSANSTIARLGQELKSEKSLIEELKLQIDRLETKLSKTDRDKKDLEDNLKEKVDSIEILQKRIDLLGVDLKGKEDVVQNLSSSLAEKELELKNLNSTYEQTKDDLSNAHFQIQRLNDEILKSREELEGKDSLVMELNSRVSSLTLENNDLSSKNDVMEKEYNDLKLTAEKKAALDAKVLREKEEELNQLKDKFELALVEAIRKQDIIANLTQEREGLKESLENESKKVNHLRYELEVTQENLGKSRNESAELEKHINQSNELRKELELEVSKLSSELTEVKESLQSRLDDAKHGAEMLASELTTAKEHLKKTQAELQSMSHELTAALENRDRLQRELIDIYKKAETTAEDLKEEKQLVASLNKELQALEKQVSKDKEARRSLEMDLEEATKSLDEMNRNALILSSELEGAKSLISSLENEKEVISKSLIEQRNANKEAQENIEDAHNLIMKLGKERENLESRGKKLEEELASAKGEILRLRSQINSSKVAVNNEKVQKDDSETGVTVSARKTVRRRKTNPQ. 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04386 723 Coils Coil 374 401 - -
Seca4g04386 723 SUPERFAMILY Tropomyosin 465 700 - -
Seca4g04386 723 Gene3D - 298 366 - -
Seca4g04386 723 Coils Coil 630 685 - -
Seca4g04386 723 Coils Coil 152 172 - -
Seca4g04386 723 Coils Coil 178 264 - -
Seca4g04386 723 MobiDBLite consensus disorder prediction 88 113 - -
Seca4g04386 723 Coils Coil 272 320 - -
Seca4g04386 723 Coils Coil 409 485 - -
Seca4g04386 723 Coils Coil 335 369 - -
Seca4g04386 723 Coils Coil 497 608 - -
Seca4g04386 723 MobiDBLite consensus disorder prediction 690 723 - -
Seca4g04386 723 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2 109 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04386 Seca-Chr4 80216385 80222260 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04386 - - gmx:100812554 915.605