Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04376 ATGGGGACATTCAATCACTATGTAATTGTTAAGTTCAAGGATAATGTGGCAGTTGAAGAGCTCATCCAAGGGTTGGAGAAGATGATCTCTGGCCTTGAGCATGTCAAGTCCTTTGAATGGGGAAAAGATATTGAAAGCCACGATATGCTAAGACAAGGTTTCACTCATGCCTTCTTGATGACATTCAATGGGAAAGAGGACTTCAATGCATTTCAGGTTCACCCCAATCATGTTAAGTTCTCCACAATATTTTCACCTGCTGTTGAGAAGATTGTGGTGCTGGATTTCCCATCTAACCTTGTCAAAGCACAAGCATGA 318 0.4151 MGTFNHYVIVKFKDNVAVEELIQGLEKMISGLEHVKSFEWGKDIESHDMLRQGFTHAFLMTFNGKEDFNAFQVHPNHVKFSTIFSPAVEKIVVLDFPSNLVKAQA. 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04376 105 SUPERFAMILY Dimeric alpha+beta barrel 2 98 IPR011008 -
Seca4g04376 105 SMART Dabb_2 4 98 IPR013097 -
Seca4g04376 105 ProSiteProfiles Stress-response A/B barrel domain profile. 4 96 IPR013097 -
Seca4g04376 105 Pfam Stress responsive A/B Barrel Domain 5 97 IPR013097 -
Seca4g04376 105 PANTHER - 2 100 IPR044662 -
Seca4g04376 105 Gene3D - 2 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04376 Seca-Chr4 80021222 80022626 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04376 - - gmx:100306003 195.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04376 4 80021222 80022626 Seca4g04376 4 80021222 80022626 ECH
Seca4g04376 4 80021222 80022626 Seca4g04376 4 80021222 80022626 PCT