Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04230 ATGATGGCCGCCGCTGTTGTCTTCTCCGTTTTGCTTCTGTCGGCGGCGGCGGTTTCTGGGTCTCCGTTTACACTAACGCTGGAAAGAGCATTCCCTTCGAATCATGGAGTGGAGTTGAGTCAGCTCAGAGCTAGGGATAGTGTCAGACATCGAAGAATGTTACAGTCTACTAACTACGTTGTAGATTTCCCAGTTAAAGGTGCCTTTGATCCCTCACAAGTTGGGCTTTACTATACAAAAGTACGGTTGGGTAGTCCTCCAAGGGAATTTTATGTGCAGATAGACACGGGAAGTGATGTTCTATGGGTTAGTTGTGGTGCTTGCAATGGCTGTCCCCAGACAAGTGGACTCCAAATTCAGCTCAATTATTTTGACCCTGGAAGTTCATCAACCTCTTCATTGATCTCTTGTTCAGACCAAAGATGTAGGATTGGAGTGCAGTCATCAGATACCAGCTGTTCCAGTCAGAGAAACCAATGCACTTACACATTCCAGTATGGAGATGGTAGTGGGACATCAGGCTATTATGTGTCAGACTTGATGCATTTTGCCAGTATTTCTGAGGGATCCCTGATGACAAATTCTTCAGCGCCTGTAGTTTTTGGTTGTAGCAACCTGCAAACTGGGGACTTGACAAAGTCTGAAAGAGCCATTGATGGGATATTTGGGTTTGGGCAAGAGGGCATGTCTGTCATCTCCCAGCTCTCTTCACAAGGAATAGCGCCAAGAGTGTTCTCTCATTGCCTGAAAGGAGATAATAGTGGTGGGGGCATATTGGTTCTTGGTGAGATTGTGGAGCCAAACATAATTTATAGTCCACTTGTTCCATCACAGCCTCATTACAATTTAAATCTGCAGAGCATCTCTGTCAATGGCCAAATTTTGCCAATTGATTCTGCTGTTTTTGCTACTTCAAACAACAGAGGTACCATTATTGATTCTGGAACAACTTTGGCATACCTTGCAGAAGAGGCTTACAATCCCTTTGTCAATGCGATTACAGCTACTATTCCACAATCTGTGCGTACTGTTCTTTCCAAGGGAAATCAGTGTTACTTGATAACCACCAGCAACATTGACATCTTTCCTCAAGTAAGTCTGAATTTTGCTGGTGGTGCATCTCTGGTTTTAAGACCACAGGACTACCTTATGCAGCAGAATTATATTGGTGATGGATCAGTGTGGTGTATTGGCTTTCAGAAATTACCGGGTCAAGGTGTAACAATTCTAGGAGACCTTGTATTGAAAGACAAAATTTTTGTCTATGATCTTGCTAGGCAACGCATTGGATGGGTTAACTATGATTGTTCATTGTCGGTTAATGTCTCTGCATCAACTGGTACGGGAAGAAGTGAATTTGTCAACGCAGGAGAGCTAAGTGGCAGCACTTCTTTACTTGATGGACCTCACAAGTTGATAAAGACAGGGATCCTTGTTCTCTTCATGCACATAACACTTGTATGTTTCTTTGTATTTTTGTAG 1482 0.4332 MMAAAVVFSVLLLSAAAVSGSPFTLTLERAFPSNHGVELSQLRARDSVRHRRMLQSTNYVVDFPVKGAFDPSQVGLYYTKVRLGSPPREFYVQIDTGSDVLWVSCGACNGCPQTSGLQIQLNYFDPGSSSTSSLISCSDQRCRIGVQSSDTSCSSQRNQCTYTFQYGDGSGTSGYYVSDLMHFASISEGSLMTNSSAPVVFGCSNLQTGDLTKSERAIDGIFGFGQEGMSVISQLSSQGIAPRVFSHCLKGDNSGGGILVLGEIVEPNIIYSPLVPSQPHYNLNLQSISVNGQILPIDSAVFATSNNRGTIIDSGTTLAYLAEEAYNPFVNAITATIPQSVRTVLSKGNQCYLITTSNIDIFPQVSLNFAGGASLVLRPQDYLMQQNYIGDGSVWCIGFQKLPGQGVTILGDLVLKDKIFVYDLARQRIGWVNYDCSLSVNVSASTGTGRSEFVNAGELSGSTSLLDGPHKLIKTGILVLFMHITLVCFFVFL. 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04230 493 Pfam Xylanase inhibitor C-terminal 280 431 IPR032799 -
Seca4g04230 493 FunFam Aspartic proteinase-like protein 2 60 263 - -
Seca4g04230 493 Pfam Xylanase inhibitor N-terminal 77 262 IPR032861 -
Seca4g04230 493 PANTHER ASPARTYL PROTEASES 10 430 IPR001461 GO:0004190|GO:0006508
Seca4g04230 493 CDD pepsin_A_like_plant 77 436 IPR034161 -
Seca4g04230 493 SUPERFAMILY Acid proteases 74 439 IPR021109 -
Seca4g04230 493 Gene3D Acid Proteases 51 263 IPR021109 -
Seca4g04230 493 Gene3D Acid Proteases 264 443 IPR021109 -
Seca4g04230 493 ProSiteProfiles Peptidase family A1 domain profile. 77 432 IPR033121 -
Seca4g04230 493 PRINTS Pepsin (A1) aspartic protease family signature 310 321 IPR001461 GO:0004190|GO:0006508
Seca4g04230 493 PRINTS Pepsin (A1) aspartic protease family signature 408 423 IPR001461 GO:0004190|GO:0006508
Seca4g04230 493 PRINTS Pepsin (A1) aspartic protease family signature 83 103 IPR001461 GO:0004190|GO:0006508
Seca4g04230 493 FunFam Aspartic proteinase-like protein 2 264 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04230 Seca-Chr4 76097296 76102871 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g04230 51 437 Miscellaneous Gene Families AT1G44130 27.407 2.00e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04230 - - gmx:100789004 840.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04230 4 76097296 76102871 Seca4g04230 4 76097296 76102871 ECH
Seca4g04230 4 76097296 76102871 Seca4g09293 4 220574590 220580121 PCT