Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04221 ATGGTAATTGATGCCTATGCAATAATAGGGGATACCACTGGTCTTGCTGAAAAGATACAGAGTTTCTTCATGCAAGAAGTTATATCAGAAACACACTTGGTGTTAAAGGCTATTGTGCATGAGGACGAGGAGGGACTTGCGCAAAATAGTAGGCTCACTTACAGCGATCTATGCCTTCAGATACCTGATTCTAAGTTTAGGCAGTGCTTGTTAAGAACATTGGCTGTTCTATTTGACCTTATGTGTTCATACCATGAAATTATGGATTTTCAGCTAGAGAGAAAGGACTCAGCAGCACAAACTTCAAATAAGTGCAATGAAGACATTTCTTGTAGTTCAGGTGAGGCTCAGGAAGTTGATTCAGACGTAAGAGCCTGCGACAATTCTATGTCCAGTTCTGGAGATATGATACATGACTCATGTTCTAGGAAGGAATCTTCAACAATTGGCTCACTGACTGAAGCTACTGATTCACCATACAGTAGTTCTCATGATCTGGTTAATGATGCTAGAAAGGAGGACAGTTCAGCATCAAGCATTGAATCCCCATGGTACCATCTTCGGAAAGAAGCTACAACATTCGTTTCACAGACCCTTCAAAGAGGACGCAAGAATCTGTGGCATCTCACTGCGAGTCGTGTGTCAGTTTTGCTTTCTTCTGCTGCAGCTTGTTCTGCAAGCATTCATCAATTCTTAAAAAATTATGAAGATCTCAGTGTATTCATTTTGACTGGGGAAGCCTTTTGTGGAATTGAAGCAGTTGAATTCAGGCAGAAGTTGAAGGTTGTTTGTGAAAACTATTTCATAGCTTTTCATCGACAAAATGTGCATGTAAGTGACCTTAAGACTTCTCATTCTTCATGGTTGTTAGAGACATATAATGTTGACTGTGATTTCTTATGCATTGCTTTTGAGCCTTTCTTGGAGAACCAGAAGTTTCATAATCCTGGAAACTGCTGTGCTGTTATTGCACTAAAAATGGTTTTGGAGAAAGAGACTTGGTTAAAATTACCACCAGATACTATACAAATTATCAGTTTTGCTGGACTTATTGGTGATGGAGCGCCGTTGATTTCTTTATCTAGTGGTAAATCAATGAATGTCAATGCGATCCATTCAGATAAATCAGTAAACCTGGTTCACACCAGTGCTAGGAAGAGTGGGTTTTCTCATTGGATTAAAAATGGAAACCCTTTTCTGCAAAAATTACCAACCCCCAAAGAAGGTCATGGTTATTCCCAATCTAATGGATCAATTTATGGTGAATATGATGGAGGTTCAACCAACAACTTTCATGATGATAAAGTATCCCCTAGAAAGAATGATTCCAATCAATCAAATGGTGCCAATTCTGTTTCAGAAGATGAAAATGAGGATCTTCTTGCTGACTTTATTGATGAAGATAGTCAACTTCCAAGTCGAAGTTCTAAACCCAATCTTTCAAGAATTCACTCTTCACATGGTAATGACGAAGAGAGTACAACACAAACTGGATCTTCTCTATGTCTTTTAAGGTCAATGGATAAATATGCAAGGCTTATGCTGAAATTAGAAGTAGTAAATGTTGAGTTCTTTAAGGGAATATGCCAGTTGTTTGAAATTTTTTTCTATTTTATATATGAAATTTTTGGCCAGCAGAACACTAATTCAAGTGGGAAAATCTCAACTAACTCTCTTAATTACCGCTTGAGGACAGCCTTGTCCAGAATAAACCAAGATTGTGAAGAGTGGATTAGGCCTCAGTCATCTTCACCAACATCTTGGAGCTCATCAGTTGTACATGCAGAGTTGACACCTACAAACCCTCCCAATATGAATTTTGGTCACTCCTCTGGGACTTCTTTGGGTCTCAAGGAAAGATGTGTGGCTGTTGACACTATGTCTCTTGTTGCTCGAATACTGAATAGATCTAAATCTCATCTCCAATCAATGCTCTTGCAAAGTAATTCAACTGTGCTAGAGGATTTCTATGTTCATCTGGTGGATGCTGTACCAGATCTTATAGAGCATGTTCATCGCACAACAGTGAGACTGCTGCTGCACATTAATGGGTATGTTGATCGGGTAGCCAATTGTAAATGGGAAGTAAAAGAGCTTGGGATGGAGCATAATGGGTATGTTGATTTGTTGCTGGGGGAGTTTAAGCACTATAAAACACGACTTGCTCATGGAGGAATTCGTAAAGAGATTCAAGACCTATTGTTGGACTATGGGCTTGAAATTGTGGCAGAAACTCTTGTTGAAGGACTTTCAAGGGTGAAGAGATGTAGTGATGAAGGACGAGCTCTAATGTCATTGGATCTGCAGGTTTTGATCAATGGGCTACAGCATTTTGTGTCATTGAATGTGAAACCCAAGCTACAAATGGTTGAAACTTTCATTAAGGCTTACTACCTTCCCGAGACAGAATATGTGCACTGGGCACGTGCACACCCGGAATACAGTAAGAGTCAGATTGTTGGACTGATCAACCTTGTTGCCACTATGAAAGGTTGGAAGAGGAAAATCAGGTTGGAAATACTGGAAAAGATTGAATGA 2538 0.3948 MVIDAYAIIGDTTGLAEKIQSFFMQEVISETHLVLKAIVHEDEEGLAQNSRLTYSDLCLQIPDSKFRQCLLRTLAVLFDLMCSYHEIMDFQLERKDSAAQTSNKCNEDISCSSGEAQEVDSDVRACDNSMSSSGDMIHDSCSRKESSTIGSLTEATDSPYSSSHDLVNDARKEDSSASSIESPWYHLRKEATTFVSQTLQRGRKNLWHLTASRVSVLLSSAAACSASIHQFLKNYEDLSVFILTGEAFCGIEAVEFRQKLKVVCENYFIAFHRQNVHVSDLKTSHSSWLLETYNVDCDFLCIAFEPFLENQKFHNPGNCCAVIALKMVLEKETWLKLPPDTIQIISFAGLIGDGAPLISLSSGKSMNVNAIHSDKSVNLVHTSARKSGFSHWIKNGNPFLQKLPTPKEGHGYSQSNGSIYGEYDGGSTNNFHDDKVSPRKNDSNQSNGANSVSEDENEDLLADFIDEDSQLPSRSSKPNLSRIHSSHGNDEESTTQTGSSLCLLRSMDKYARLMLKLEVVNVEFFKGICQLFEIFFYFIYEIFGQQNTNSSGKISTNSLNYRLRTALSRINQDCEEWIRPQSSSPTSWSSSVVHAELTPTNPPNMNFGHSSGTSLGLKERCVAVDTMSLVARILNRSKSHLQSMLLQSNSTVLEDFYVHLVDAVPDLIEHVHRTTVRLLLHINGYVDRVANCKWEVKELGMEHNGYVDLLLGEFKHYKTRLAHGGIRKEIQDLLLDYGLEIVAETLVEGLSRVKRCSDEGRALMSLDLQVLINGLQHFVSLNVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQIVGLINLVATMKGWKRKIRLEILEKIE. 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04221 845 Pfam Protein of unknown function C-terminus (DUF2451) 615 845 IPR019514 -
Seca4g04221 845 MobiDBLite consensus disorder prediction 467 498 - -
Seca4g04221 845 MobiDBLite consensus disorder prediction 469 483 - -
Seca4g04221 845 MobiDBLite consensus disorder prediction 408 425 - -
Seca4g04221 845 MobiDBLite consensus disorder prediction 403 455 - -
Seca4g04221 845 MobiDBLite consensus disorder prediction 152 174 - -
Seca4g04221 845 Pfam Vacuolar-sorting protein 54, of GARP complex 1 90 IPR019515 -
Seca4g04221 845 PANTHER UNCHARACTERIZED 321 845 IPR040047 GO:0032456|GO:0042147|GO:1990745
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04221 Seca-Chr4 75829455 75844774 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04221 K23288 - gmx:100788476 1373.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04221 4 75829455 75844774 Seca4g04221 4 75829455 75844774 ECH