Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04214 ATGGCTCCAAAGAAAGCTGAGAAAATGGTGGTTAGATCCACCAGGAAAGTTGTGGAATCAACTGTACAAGTCTCAGTTATGGGAAGCAGCAAAAGAGTAACCAGAGGAAACAGAGATATTCAGACAGGGGAAGAAGTAGGTGTTGTAAGCCAAGAGCAAGTAAGGGTCATTCCCATTCAAGAAGTGACTCCTCATCCCAAAGAGGATTCAAGCACCACCACCACTGTCACTACTGAAAACAAAACTGAGCAAGAAAATGCTCAAATCCAAAATCAAATGGAAGAGCAAAAGGGAGACATTGTCAAAGAGCCATCTCTTGAGAAAGAGAAGGCAAAGAAGGACAAGACCCAAGAAGGGCATCAAGGTAAGGAAAAGATGAGGAAAAAGAGGAAGAGGAGAAATGTAGAAGGGTACCAGAGGTATGTGTACAGGGTATTGAAGCAAGTGCACCCTGAAATGGGAATTTCTTCAAAATGCATGACTATACTGAACAATTTGATGAATGACATGTTTGAGAGGCTGGCTGATGAGGCTACCAAGTTGAAGAACTACACTGGACATATGACATTGTCATCGAGGGAGATTCAAGGAGCAGTGAAGCTGGTTTTGCCTGGGGAGCTTGGGAAGCATGCCATGGCTGAAGGGGTCAAAGCTGTGACCACCTATACGTCCCATGATGCCTGA 684 0.4444 MAPKKAEKMVVRSTRKVVESTVQVSVMGSSKRVTRGNRDIQTGEEVGVVSQEQVRVIPIQEVTPHPKEDSSTTTTVTTENKTEQENAQIQNQMEEQKGDIVKEPSLEKEKAKKDKTQEGHQGKEKMRKKRKRRNVEGYQRYVYRVLKQVHPEMGISSKCMTILNNLMNDMFERLADEATKLKNYTGHMTLSSREIQGAVKLVLPGELGKHAMAEGVKAVTTYTSHDA. 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04214 227 Coils Coil 79 99 - -
Seca4g04214 227 MobiDBLite consensus disorder prediction 59 133 - -
Seca4g04214 227 PRINTS Histone H2B signature 209 222 IPR000558 GO:0000786|GO:0003677|GO:0030527
Seca4g04214 227 PRINTS Histone H2B signature 157 177 IPR000558 GO:0000786|GO:0003677|GO:0030527
Seca4g04214 227 PRINTS Histone H2B signature 138 156 IPR000558 GO:0000786|GO:0003677|GO:0030527
Seca4g04214 227 PRINTS Histone H2B signature 179 196 IPR000558 GO:0000786|GO:0003677|GO:0030527
Seca4g04214 227 PRINTS Histone H2B signature 196 209 IPR000558 GO:0000786|GO:0003677|GO:0030527
Seca4g04214 227 MobiDBLite consensus disorder prediction 65 95 - -
Seca4g04214 227 FunFam Histone H2B 103 225 - -
Seca4g04214 227 MobiDBLite consensus disorder prediction 96 123 - -
Seca4g04214 227 PANTHER HISTONE H2B 108 224 IPR000558 GO:0000786|GO:0003677|GO:0030527
Seca4g04214 227 Pfam Core histone H2A/H2B/H3/H4 82 201 IPR007125 GO:0003677
Seca4g04214 227 Gene3D Histone, subunit A 97 225 IPR009072 GO:0046982
Seca4g04214 227 SUPERFAMILY Histone-fold 110 225 IPR009072 GO:0046982
Seca4g04214 227 SMART h2b3 128 224 IPR000558 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04214 Seca-Chr4 75603114 75603797 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04214 K11252 - gmx:100786873 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04214 4 75603114 75603797 Seca4g04214 4 75603114 75603797 ECH