Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04203 ATGGCACTGCCACACTCTATCTCTGCCTTAGCAACCACAGTCACACTTTCATCACCGAGAAGCAAACCACCGAACCCGAAACCCCTTCCTTTTTCGGCCTTCACAAAGTCACCATTTTTGACGAAACAAACAAGACCCATCAGCAGAAGAAACCTTTCCCTAAAACCTTTACGCGTTGCGGCGCCACCCACAACAATTGAACCCGATCAATCATTCCCAGAAGCGGAAATTGAGGAGGAGTTTGGCGATGAGAGCTCGTCCTCAAAGTTTTCTTGGAGGGATCATTGGTACCCAGTTTCGTTAATTGAAGATCTGAACCCTAGCATGCCCACACAATTTCAGCTTCTAGGTCGTGACATCGTGCTTTGGTACGACAATTCCAACTCCCAGTGGGTTGCTTTCGACGACAAATGCCCCCATCGTCTTGCCCCCTTATCTGAAGGGAGGATCGATGAAAATGGAAACTTGCAGTGTTCTTATCATGGGTGGGCTTTCGATGGGTGTGGATCCTGTGTTGTGATCCCTCAGGCTTCACCTGAAGGCCCTGAAGCTCGTGCTGTTCGGTCTCCTAAAGCATGTGCCACTAGGTTCCCTACCATGGTGTCTCAGGGCTTGCTCTTTGTTTGGCCTGATGAGAATGGTTGGGAGAAAGCAAAGGCCTCCAAGCCTCCATTGTTGCCTGATGACTTTGAAAAACCAGAGTTTGCCACAGTGAACATTCAGCGTGATCTGTTTTATGGCTATGATACTCTCATGGAGAATGTCTCTGACCCTTCTCACATTGATTTTGCTCATCACAAGGTTACAGGAAGGAGAGATAGAGCCAAGCCTCTGCCATTCAAGATGGAATCTCGTGGTCCATGGGGCTTTGCAGGAGCTAATGAAGGGAACCCACGGATCAGTGCCAAATTTGTTGCACCGTGTTATTCTATGAACAAGATTGAGATTGATACCAAACTCCCAATAGTTGGTGACCAGAAATGGGTAATATGGATATGTTCCTTCAATATCCCCATGGCACCTGGAAAGACTCGTTCCATTGTTTGCAGTGCTCGAAACTTCTTCCAGTTCACAGTGCCAGGGCCTGCCTGGTGGCAAGTAAGATTTCTTTGTTCAATGCTGTCTTTCCCTTCTGTTCGATAA 1143 0.4768 MALPHSISALATTVTLSSPRSKPPNPKPLPFSAFTKSPFLTKQTRPISRRNLSLKPLRVAAPPTTIEPDQSFPEAEIEEEFGDESSSSKFSWRDHWYPVSLIEDLNPSMPTQFQLLGRDIVLWYDNSNSQWVAFDDKCPHRLAPLSEGRIDENGNLQCSYHGWAFDGCGSCVVIPQASPEGPEARAVRSPKACATRFPTMVSQGLLFVWPDENGWEKAKASKPPLLPDDFEKPEFATVNIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKMESRGPWGFAGANEGNPRISAKFVAPCYSMNKIEIDTKLPIVGDQKWVIWICSFNIPMAPGKTRSIVCSARNFFQFTVPGPAWWQVRFLCSMLSFPSVR. 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04203 380 SUPERFAMILY Bet v1-like 203 354 - -
Seca4g04203 380 SUPERFAMILY ISP domain 89 214 IPR036922 GO:0051537
Seca4g04203 380 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 32 366 - -
Seca4g04203 380 Pfam Rieske [2Fe-2S] domain 95 179 IPR017941 GO:0051537
Seca4g04203 380 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 96 208 IPR017941 GO:0051537
Seca4g04203 380 Gene3D - 235 366 - -
Seca4g04203 380 MobiDBLite consensus disorder prediction 13 34 - -
Seca4g04203 380 Pfam Pheophorbide a oxygenase 304 367 IPR013626 GO:0010277
Seca4g04203 380 CDD Rieske_RO_Alpha_PaO 79 218 - -
Seca4g04203 380 Gene3D - 91 234 IPR036922 GO:0051537
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04203 Seca-Chr4 75486777 75490663 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04203 K13071 - gmx:100812162 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04203 4 75486777 75490663 Seca4g04203 4 75486777 75490663 ECH