Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04191 ATGCAACTAGCCATGGCACCCCACGCTGTCGTGTCACCCTCACCTCATTCACTTCTCCGATCATCCTTCTCCGGCGTCTCCCTCAAGCTCTCCCCCCAATTCCCAACCTTTTCACCCTCCAAGCCCTTCGCCGTCTTCGCAGCTACCAAGAAAGCCGTCGCCGTTCTCAAGGGCACCTCCGCCGTGGAAGGCGTCGTTACCCTCACCCAAGATGATAATGGCCCAACAACAGTTAATGTTCGTGTTACTGGCCTTACTCCAGGGCTTCATGGTTTTCACCTACATGAGTATGGTGATACCACAAATGGATGTATCTCAACGGGACCACATTTTAATCCGAATGGCATGACGCATGGTGCTCCTGAAGATGAAATCCGTCATGCGGGTGACCTGGGAAACATAGTTGCTAGTGCAGATGGGGTTGCAGAGGCAACAATTGTGGATAATCAGATCCCACTCTCTGGTCCAAATTCAGTAGTTGGGAGAGCCTTGGTGGTTCATGAGCTTGAAGATGACCTTGGAAAGGGCGGGCATGAACTTAGTTTGAGCACTGGAAATGCTGGTGGAAGATTAGCATGTGGTGTGGTTGGTTTGACTCCAGTATAA 606 0.5116 MQLAMAPHAVVSPSPHSLLRSSFSGVSLKLSPQFPTFSPSKPFAVFAATKKAVAVLKGTSAVEGVVTLTQDDNGPTTVNVRVTGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNGMTHGAPEDEIRHAGDLGNIVASADGVAEATIVDNQIPLSGPNSVVGRALVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGLTPV. 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04191 201 PRINTS Cu-Zn-superoxide dismutase family signature 91 113 IPR001424 GO:0006801|GO:0046872
Seca4g04191 201 PRINTS Cu-Zn-superoxide dismutase family signature 127 136 IPR001424 GO:0006801|GO:0046872
Seca4g04191 201 PRINTS Cu-Zn-superoxide dismutase family signature 146 168 IPR001424 GO:0006801|GO:0046872
Seca4g04191 201 PRINTS Cu-Zn-superoxide dismutase family signature 171 197 IPR001424 GO:0006801|GO:0046872
Seca4g04191 201 PANTHER SUPEROXIDE DISMUTASE CU-ZN -RELATED 32 198 IPR024134 GO:0005507
Seca4g04191 201 FunFam Superoxide dismutase [Cu-Zn], chloroplastic 47 200 - -
Seca4g04191 201 SUPERFAMILY Cu,Zn superoxide dismutase-like 51 198 IPR036423 GO:0006801|GO:0046872
Seca4g04191 201 CDD Cu-Zn_Superoxide_Dismutase 50 193 IPR001424 GO:0006801|GO:0046872
Seca4g04191 201 ProSitePatterns Copper/Zinc superoxide dismutase signature 1. 91 101 IPR018152 -
Seca4g04191 201 ProSitePatterns Copper/Zinc superoxide dismutase signature 2. 185 196 IPR018152 -
Seca4g04191 201 Gene3D Superoxide dismutase, copper/zinc binding domain 46 200 IPR036423 GO:0006801|GO:0046872
Seca4g04191 201 Pfam Copper/zinc superoxide dismutase (SODC) 62 196 IPR001424 GO:0006801|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04191 Seca-Chr4 75378922 75384197 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04191 K04565 - gmx:100784752 340.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04191 4 75378922 75384197 Seca4g04191 4 75378922 75384197 ECH