Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04139 ATGGCTTCAGCCAACGCTCTCTCCTCAGCCTCCATTTTGCGCTCTCCCAAGCACCAGGCACAGAGTCTCACCAGGAGGGTCAACCACAACACTGGCAGGTTAAATTACAGGCAACCAAACAACCGTTTCACGGTGAAAGCCTCCGCCAAAGAAATTGCATTCGACCAGAATTCACGCGCCGCCATTCAAGCTGGCATTGATAAACTTGCGGATGCCGTTGGCCTCACTCTCGGGCCAAGGGGGAGGAATGTTGTGTTGGATGAGTATGGAAGTCCTAGGGTAGTTAACGATGGGGTCACTATTGCTAGAGCTATTGAACTACCTGATGCAATGGAAAATGCTGGTGCAGCTCTAATTAGGGAGGTTGCAAGTAAAACCAATGACTCTGCGGGTGATGGGACAACGACGGCTTCGGTTCTTGCTCGTGAAATCATTAAGCTTGGACTTCTCAGCGTGACCTCTGGTGCTAATCCTGTGTCACTCAAGAGAGGAATTGATAAAACTGTACAGGGTTTGGTGGAGGAGCTTGAGAAGAAGGCAAGGCCTGTCAAAGGTGGAGATGATATCAAAGTTGCGTCTATTTCTGCTGGAAATGATGAATTGATTGGACAAATGATTGCCGAAGCAATTGACAAGGTTGGACCTGATGGTGTTTTGTCCATTGAGTCTTCATCCTCGTTTGAGACAACTGTTGAGGTTGAAGAAGGAATGGAGATTGACAGAGGATATGTCTCCCCTCAATTTGTTACAAACCCTGAGAAATCAATTGTTGAATTTGAGAATGCAAGAGTCTTGATTACAGATCAGAAGATTTCAGCAATAAAAGATATAATTCCACTGTTGGAGAAAACCACTCAATTGAGAGCCCCGTTGCTTATCATTGCTGAAGATGTCACCGGTGAGGCTTTGGCTACCCTTGTTGTGAATAAGCTGCGTGGCATCCTTAATGTTGCTGCCATCAAAGCTCCTGGCTTTGGTGAGCGGCGAAAGGCCCTCCTTCAAGACATTGCTATATTGACAGGATATGCTTTGCTGACAATTTTGTACCTTCAACTGCTAGGTGCTGAGTTCCAAGCTAGTGATCTGGGCCTACTTGTTGAAAACACCTCAGTTGAACAACTTGGTTTGGCTCGGAAAGTGACCATCTCCAAGGATTCTACCACTATTATTGCTGATGCCGCATCAAAGGATGAGTTGCAAGCCAGGGTTGCACAATTAAAGAAAGAGTTGGCAGAGACAGACTCAGTTTATGATACAGAGAAACTGGCTGAGAGAATTGCTAAACTGTCTGGTGGAGTTGCAGTCATCAAGGTTGGAGCGGCTACAGAGACTGAACTTGAGGATCGTAAGCTCCGCATTGAGGATGCCAAGAATGCAACTTTTGCTGCCATTGAGGAAGGTATTGTTCCAGGTGGAGGTACTGCATTGGTTCATCTCTCTGCTTTTGTCCCAGCAATCAAGGATAAGCTTGAAGATGCAGATGAGAGGCTGGGAGCCGACATTGTGCAAAAGGCACTGATAGCACCTGCATCATTGATTGCTCAAAATGCTGGAATAGAGGGTGAAGTAGTTGTGGAGAAAATAAAGAATGGTGATTGGGAGGTTGGCTACAATGCCATGACTGACAAATATGAGAACTTAGTTGAGGTCGGAGTCATTGACCCTGCCAAGGTAACAAGGTGTGCTTTGCAGAATGCTGCTTCAGTGGCTGGAATGGTCTTGACCACACAGGCCATTGTGGTGGAAAAACCTAAGCCCAAGGCACCAGCTGCTGCTGCCCCACAAGGCCTTACTGTTTGA 1800 0.4672 MASANALSSASILRSPKHQAQSLTRRVNHNTGRLNYRQPNNRFTVKASAKEIAFDQNSRAAIQAGIDKLADAVGLTLGPRGRNVVLDEYGSPRVVNDGVTIARAIELPDAMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVQGLVEELEKKARPVKGGDDIKVASISAGNDELIGQMIAEAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYVSPQFVTNPEKSIVEFENARVLITDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAILTGYALLTILYLQLLGAEFQASDLGLLVENTSVEQLGLARKVTISKDSTTIIADAASKDELQARVAQLKKELAETDSVYDTEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSAFVPAIKDKLEDADERLGADIVQKALIAPASLIAQNAGIEGEVVVEKIKNGDWEVGYNAMTDKYENLVEVGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAPAAAAPQGLTV. 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04139 599 MobiDBLite consensus disorder prediction 1 37 - -
Seca4g04139 599 FunFam 60 kDa chaperonin 236 430 - -
Seca4g04139 599 Hamap Chaperonin GroEL [groEL]. 48 597 IPR001844 GO:0042026|GO:0140662
Seca4g04139 599 NCBIfam chaperonin GroEL 49 585 IPR001844 GO:0042026|GO:0140662
Seca4g04139 599 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 41 590 IPR001844 GO:0042026|GO:0140662
Seca4g04139 599 SUPERFAMILY GroEL equatorial domain-like 57 580 IPR027413 -
Seca4g04139 599 Gene3D - 52 581 IPR027413 -
Seca4g04139 599 PRINTS 60kDa chaperonin signature 128 155 IPR001844 GO:0042026|GO:0140662
Seca4g04139 599 PRINTS 60kDa chaperonin signature 455 476 IPR001844 GO:0042026|GO:0140662
Seca4g04139 599 PRINTS 60kDa chaperonin signature 73 99 IPR001844 GO:0042026|GO:0140662
Seca4g04139 599 PRINTS 60kDa chaperonin signature 312 335 IPR001844 GO:0042026|GO:0140662
Seca4g04139 599 SUPERFAMILY GroEL-intermediate domain like 419 465 IPR027410 -
Seca4g04139 599 Gene3D - 182 467 IPR027410 -
Seca4g04139 599 Gene3D GroEL 236 430 IPR027409 -
Seca4g04139 599 Pfam TCP-1/cpn60 chaperonin family 69 584 IPR002423 GO:0005524
Seca4g04139 599 SUPERFAMILY GroEL-intermediate domain like 187 248 IPR027410 -
Seca4g04139 599 CDD GroEL 50 582 IPR001844 GO:0042026|GO:0140662
Seca4g04139 599 ProSitePatterns Chaperonins cpn60 signature. 462 473 IPR018370 GO:0005524|GO:0006457
Seca4g04139 599 Coils Coil 396 416 - -
Seca4g04139 599 SUPERFAMILY GroEL apical domain-like 228 433 IPR027409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04139 Seca-Chr4 73967988 73971525 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04139 - - gmx:100775463 988.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04139 4 73967988 73971525 Seca4g04139 4 73967988 73971525 ECH