Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g04117 ATGATGTACAGTGATATAGGCCGTCTGAATTGCAATGTCAGCTATACAACATTTGCAACTCCGGTTCGTGGACAGGGTTCAGACCACAAAGAGTACTCTGCGATGCTTCATAAAGCTTTGGAGGGTGCAATAATATTGGAAACCTTCCCCAAGACAACTGTGGATGTTTTTGCACTGGTGCTGGAATCTAGCGGCAGTGATCTCCCGGTTGTCATATCTTGTGCTAGCCTTGCCCTGGCAGATGCTGGAATAATGATGTATGACCTTGTTGCCTCAGTTTCTGTGTCATGTCTCAGTAAGAACCTTGTCATTGATCCTGTTTGGGAGGAGGAAAACTGCCAAGATGGAAGCTTAATGATTACATGCATGCCTTCACGCTATGAAATCACCCAACTGACAGTTACTGGGGAATGGTCCACCCCAAAGATTAATGAGGGAATGCAGCTGTGCTTGGATGCTTGTGCAAAGCTTGCCAAGATTATGAGGTCATGTTTGAAAGAAGCTGCTTCTGATTCACAGGAATAG 525 0.4533 MMYSDIGRLNCNVSYTTFATPVRGQGSDHKEYSAMLHKALEGAIILETFPKTTVDVFALVLESSGSDLPVVISCASLALADAGIMMYDLVASVSVSCLSKNLVIDPVWEEENCQDGSLMITCMPSRYEITQLTVTGEWSTPKINEGMQLCLDACAKLAKIMRSCLKEAASDSQE. 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g04117 174 Pfam 3' exoribonuclease family, domain 1 7 84 IPR001247 -
Seca4g04117 174 SUPERFAMILY Ribosomal protein S5 domain 2-like 3 115 IPR020568 -
Seca4g04117 174 SUPERFAMILY Ribonuclease PH domain 2-like 86 171 IPR036345 -
Seca4g04117 174 FunFam Exosome complex component RRP41-like 1 170 - -
Seca4g04117 174 Gene3D - 1 173 IPR027408 -
Seca4g04117 174 Pfam 3' exoribonuclease family, domain 2 88 148 IPR015847 -
Seca4g04117 174 CDD RNase_PH_MTR3 3 167 - -
Seca4g04117 174 PANTHER EXOSOME COMPLEX COMPONENT 4 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g04117 Seca-Chr4 73543981 73547477 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g04117 K12587 - gmx:100816271 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g04117 4 73543981 73547477 Seca4g04117 4 73543981 73547477 ECH